Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: red, far-red light phototransduction

Term: GO:0009585  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene101258 SustainPine v3.0 557
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome 2.305e-15
Internal
sp_v3.0_unigene102850 SustainPine v3.0 592
AutoFact: Protein GIGANTEA n=39 Tax=Poaceae RepID=GIGAN_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein GIGANTEA 1.318e-09
Internal
sp_v3.0_unigene103704 SustainPine v3.0 388
AutoFact: Protein SPA1-RELATED 4 n=2 Tax=Arabidopsis RepID=SPA4_ARATH 2.0e-26
FL-Next: sp=Protein SPA1-RELATED 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene106028 SustainPine v3.0 271
AutoFact: COP1 like protein [Arabidopsis thaliana] 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 8.033e-11
Putative N-terminus
sp_v3.0_unigene106070 SustainPine v3.0 475
AutoFact: Transcription factor SPATULA n=2 Tax=Arabidopsis RepID=SPT_ARATH 9.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Helix-loop-helix DNA-binding domain containing protein, expressed 5.908e-06
N-terminus
sp_v3.0_unigene106227 SustainPine v3.0 409
AutoFact: putative COP1, constitutive photomorphogenesis 1 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP1 regulatory protein 1.256e-11
Putative N-terminus
sp_v3.0_unigene106556 SustainPine v3.0 427
AutoFact: SPA1-related 4 protein [Arabidopsis thaliana] ref|NP_849802.1| SPA1-related 4 protein [Arabidopsis thaliana] sp|Q94BM7.1|SPA4_ARATH RecName: Full=Protein SPA1-RELATED 4 gb|AAK64180.1| putative phytochrome A supressor spa1 protein [Arabidopsis thaliana] gb 4.2039e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 7.641e-14
Putative N-terminus
sp_v3.0_unigene106785 SustainPine v3.0 370
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome C 0.0
Internal
sp_v3.0_unigene106933 SustainPine v3.0 382
AutoFact: bHLH transcription factor PTF1-like [Oryza sativa Japonica Group] 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 1.252e-19
N-terminus
sp_v3.0_unigene107126 SustainPine v3.0 198
AutoFact: deetiolated 1-like protein [Solanum tuberosum] 8.0e-15
FL-Next: sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: Light-mediated development protein DET1 1.411e-09
Internal
sp_v3.0_unigene107322 SustainPine v3.0 365
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 1.626e-19
Internal
sp_v3.0_unigene107587 SustainPine v3.0 171
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 9.0e-20
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome C 7.375e-29
Internal
sp_v3.0_unigene109951 SustainPine v3.0 260
AutoFact: Phytochrome P (Fragment) n=7 Tax=Coniferales RepID=F2Q6H5_9CONI 2.0e-23
FL-Next: sp=Phytochrome; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phytochrome 9.82e-21
Internal
sp_v3.0_unigene110955 SustainPine v3.0 115
unknown
sp_v3.0_unigene112443 SustainPine v3.0 345
AutoFact: Phytochrome n=43 Tax=Spermatophyta RepID=PHY_PINSY 2.0e-10
FL-Next: sp=Phytochrome; Pinus sylvestris (Scots pine). 0.0
Internal
sp_v3.0_unigene113915 SustainPine v3.0 456
AutoFact: COP9 signalosome complex subunit 2 [Arabidopsis thaliana] sp|Q8W207.1|CSN2_ARATH RecName: Full=COP9 signalosome complex subunit 2; Short=Signalosome subunit 2; AltName: Full=Protein FUSCA 12 gb|AAL58101.1|AF395058_1 CSN complex subunit 2 [Arabidopsis thal 6.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 2 2.893e-13
N-terminus
sp_v3.0_unigene114534 SustainPine v3.0 342
AutoFact: R2R3-MYB transcription factor n=1 Tax=Pinus taeda RepID=Q6V0J3_PINTA 6.0e-20
FL-Next: tr=R2R3-MYB transcription factor; Pinus taeda (Loblolly pine). 0.0
Sma3: Myb-related protein Hv33 1.353e-13
N-terminus
sp_v3.0_unigene117765 SustainPine v3.0 189
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 1.0e-27
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 0.0
Internal
sp_v3.0_unigene120678 SustainPine v3.0 269
AutoFact: Ubiquitin ligase protein cop1, putative n=1 Tax=Ricinus communis RepID=B9T5N2_RICCO 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 4.548e-11
Internal
sp_v3.0_unigene123491 SustainPine v3.0 203
AutoFact: Phytochrome (Fragment) n=2 Tax=Picea abies RepID=Q40757_PICAB 3.0e-26
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome C 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain