Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene24628 SustainPine v3.0 669
• AutoFact: large subunit ribosomal protein 1 [Pristionchus americanus] 0.0
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 5.643e-38
N-terminus
sp_v3.0_unigene25453 SustainPine v3.0 3616
• AutoFact: putative endomembrane protein 70 [Arabidopsis thaliana] gb|AAK96649.1| T5E21.14/T5E21.14 [Arabidopsis thaliana] gb|AAM16222.1| At1g14670/T5E21.14 [Arabidopsis thaliana] gb|AEE29200.1| putative endomembrane protein 70 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEE2 7.252e-40
Complete
sp_v3.0_unigene26518 SustainPine v3.0 237
• AutoFact: Ribosomal protein n=1 Tax=Taenia asiatica RepID=A3F4S3_TAEAS 3.0e-16
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 1.624e-22
C-terminus
sp_v3.0_unigene26754 SustainPine v3.0 1194
• AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TPR domain protein 1.327e-08
Putative Complete
sp_v3.0_unigene26774 SustainPine v3.0 1925
• AutoFact: [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Poly(A) polymerase, putative 3.223e-08
Complete
sp_v3.0_unigene27429 SustainPine v3.0 400
• AutoFact: MRNA transport factor n=1 Tax=Triticum aestivum RepID=Q2QKB2_WHEAT 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-binding protein 8A 1.317e-07
C-terminus
sp_v3.0_unigene28003 SustainPine v3.0 387
• AutoFact: pfam00588, SpoU_methylase, SpoU rRNA Methylase family 1.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene28072 SustainPine v3.0 1198
• AutoFact: [J] COG0219 Predicted rRNA methylase (SpoU class) 6.0e-36
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene28085 SustainPine v3.0 1442
• AutoFact: putative exoribonuclease [Oryza sativa Japonica Group] gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed [Oryza sativa Japonica Group] gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group] dbj|BAH00946. 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene28405 SustainPine v3.0 330
• AutoFact: Ribosomal protein n=1 Tax=Caenorhabditis elegans RepID=Q95Y46_CAEEL 4.0e-24
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 1.108e-29
C-terminus
sp_v3.0_unigene28584 SustainPine v3.0 661
• AutoFact: Symplekin, putative n=1 Tax=Ricinus communis RepID=B9SQ20_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene28843 SustainPine v3.0 493
• AutoFact: uncharacterized protein [Arabidopsis thaliana] dbj|BAB10058.1| unnamed protein product [Arabidopsis thaliana] gb|AAT41837.1| At5g23850 [Arabidopsis thaliana] dbj|BAD94534.1| putative protein [Arabidopsis thaliana] gb|AED93222.1| uncharacterized protein [A 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: KDEL motif-containing protein 1, putative 3.204e-20
Internal
sp_v3.0_unigene29117 SustainPine v3.0 2712
• AutoFact: Ubiquitin fusion degradaton protein, putative n=1 Tax=Ricinus communis RepID=B9STM3_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative PRLI-interacting factor K 7.886e-13
Complete
sp_v3.0_unigene29621 SustainPine v3.0 1011
• AutoFact: magnesium chelatase subunit [Glycine max] 0.0
• FL-Next: sp=Magnesium-chelatase subunit ChlH, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Magnesium-chelatase subunit chlH chloroplast 3.506e-09
N-terminus
sp_v3.0_unigene30114 SustainPine v3.0 1261
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene30506 SustainPine v3.0 729
• AutoFact: U2-associated protein SR140 [Arabidopsis thaliana] gb|AAK25922.1|AF360212_1 unknown protein [Arabidopsis thaliana] gb|AAK64118.1| unknown protein [Arabidopsis thaliana] gb|AED93395.1| U2-associated protein SR140 [Arabidopsis thaliana] 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene30745 SustainPine v3.0 217
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene31512 SustainPine v3.0 544
• AutoFact: 60S ribosomal protein L10A n=1 Tax=Ectocarpus siliculosus RepID=D8LNU8_ECTSI 0.0
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 7.194e-38
Putative N-terminus
sp_v3.0_unigene31846 SustainPine v3.0 491
• AutoFact: ribosomal protein L10Ae [Scarabaeus laticollis] 5.0e-34
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 7.115e-35
N-terminus
sp_v3.0_unigene32176 SustainPine v3.0 535
• AutoFact: Ribosomal protein n=1 Tax=Taenia asiatica RepID=A3F4S3_TAEAS 3.00004e-41
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 9.308e-36
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain