Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene130975 SustainPine v3.0 341
AutoFact: symplekin [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] gb|AED90339.1| symplekin [Arabidopsis thaliana] 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene131456 SustainPine v3.0 543
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene133792 SustainPine v3.0 623
AutoFact: EMP70 multi-domain protein 9.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transmembrane 9 superfamily protein member 1 8.983e-12
C-terminus
sp_v3.0_unigene135497 SustainPine v3.0 377
AutoFact: Pre-mRNA splicing factor [Solanum tuberosum] 9.0e-18
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene136001 SustainPine v3.0 390
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 4.0e-38
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene136495 SustainPine v3.0 222
AutoFact: polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB87625.1| polynucleotide phosphorylase [Arabidop 3.0e-23
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene136537 SustainPine v3.0 413
AutoFact: Mg protoporphyrin IX chelatase n=2 Tax=Nicotiana tabacum RepID=O22435_TOBAC 0.0
FL-Next: sp=Magnesium-chelatase subunit ChlH, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Magnesium-chelatase subunit chlH chloroplast 3.06e-09
Internal
sp_v3.0_unigene136859 SustainPine v3.0 190
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene137596 SustainPine v3.0 418
AutoFact: EMP70 domain containing protein 7.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transporter, putative 3.983e-09
Internal
sp_v3.0_unigene138152 SustainPine v3.0 218
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Sma3: Putative uncharacterized protein OJ1611_C08.15 6.823e-06
Internal
sp_v3.0_unigene138654 SustainPine v3.0 280
AutoFact: XPA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S614_RICCO 2.0e-34
FL-Next: tr=XPA-binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene140028 SustainPine v3.0 421
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 1.0e-38
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene140555 SustainPine v3.0 824
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
C-terminus
sp_v3.0_unigene140924 SustainPine v3.0 522
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene144489 SustainPine v3.0 516
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene144980 SustainPine v3.0 1161
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: TPR domain protein 3.433e-08
Putative Complete
sp_v3.0_unigene149157 SustainPine v3.0 281
AutoFact: 60S ribosomal protein L10A, putative n=1 Tax=Pediculus humanus corporis RepID=E0VKG9_PEDHC 1.0e-11
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene149466 SustainPine v3.0 183
AutoFact: Polyribonucleotide nucleotidyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SFA0_RICCO 2.0e-23
FL-Next: tr=Polyribonucleotide nucleotidyltransferase, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene150029 SustainPine v3.0 245
AutoFact: Unassigned protein
FL-Next: tr=Squamous cell carcinoma antigen recognized by T-cells, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene150784 SustainPine v3.0 432
AutoFact: Tetratricopeptide repeat protein 21B putative n=1 Tax=Albugo laibachii Nc14 RepID=F0VYT9_9STRA 2.0e-38
FL-Next: tr=Tetratricopeptide repeat protein 21B putative; Albugo laibachii Nc14. 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain