Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene103954 SustainPine v3.0 352
AutoFact: Polynucleotide phosphorylase n=2 Tax=Arabidopsis RepID=Q9S7G6_ARATH 4.0e-31
FL-Next: tr=Polynucleotide phosphorylase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene104728 SustainPine v3.0 441
AutoFact: protein dicer-like 3 [Arabidopsis thaliana] emb|CAB88120.1| putative protein [Arabidopsis thaliana] gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana] gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana] 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene104780 SustainPine v3.0 114
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 2.0e-08
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene105016 SustainPine v3.0 507
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 6.0e-31
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
Sma3: Dicer-like 4 1.165e-08
N-terminus
sp_v3.0_unigene105592 SustainPine v3.0 199
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene106189 SustainPine v3.0 337
AutoFact: Dicer-like protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IKF4_POPTR 2.0e-17
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 0.0
Sma3: Dicer-like 3 7.997e-09
Internal
sp_v3.0_unigene106326 SustainPine v3.0 106
AutoFact: protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] gb|AAM13111.1| unknown protein [Arabidopsis thaliana] gb|AAP37764.1| At3g17040 [Arabidopsis thaliana] gb|AEE75897.1| protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] 6.0e-07
FL-Next: tr=Protein high chlorophyll fluorescent 107; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Similarity to O-linked GlcNAc transferase 8.285e-06
Internal
sp_v3.0_unigene107401 SustainPine v3.0 353
AutoFact: G patch domain-containing protein 1 n=2 Tax=Arabidopsis RepID=Q8GXN9_ARATH 1.0e-19
FL-Next: tr=G patch domain-containing protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene107908 SustainPine v3.0 588
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HHX6_POPTR 4.00001e-40
FL-Next: sp=Endoribonuclease Dicer homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dicer-like protein 3.417e-20
N-terminus
sp_v3.0_unigene108057 SustainPine v3.0 367
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 9.0e-24
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene108820 SustainPine v3.0 486
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene109509 SustainPine v3.0 168
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 3.0e-11
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 1.265e-07
Internal
sp_v3.0_unigene109854 SustainPine v3.0 221
AutoFact: DUF946 domain containing protein 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene109933 SustainPine v3.0 449
AutoFact: dicer-like protein 4 [Arabidopsis thaliana] sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4 gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] 1.0e-23
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Dicer-like protein 3.366e-07
Internal
sp_v3.0_unigene110158 SustainPine v3.0 292
AutoFact: symplekin [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] gb|AED90339.1| symplekin [Arabidopsis thaliana] 4.0e-21
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene110831 SustainPine v3.0 379
AutoFact: polyribonucleotide phophorylase [Spinacia oleracea] 1.0e-18
FL-Next: tr=Polyribonucleotide nucleotidyltransferase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: Polynucleotide phosphorylase 1.657e-08
Putative N-terminus
sp_v3.0_unigene110946 SustainPine v3.0 213
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 2.0e-08
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 1.265e-07
Internal
sp_v3.0_unigene110973 SustainPine v3.0 442
AutoFact: KDEL motif-containing protein 1, putative n=1 Tax=Ricinus communis RepID=B9R9B2_RICCO 6.99949e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: KDEL motif-containing protein 1, putative 3.022e-20
Internal
sp_v3.0_unigene111128 SustainPine v3.0 182
AutoFact: putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] 1.0e-09
FL-Next: tr=Putative uncharacterized protein Sb04g026110; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene111235 SustainPine v3.0 341
AutoFact: protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] gb|AAM13111.1| unknown protein [Arabidopsis thaliana] gb|AAP37764.1| At3g17040 [Arabidopsis thaliana] gb|AEE75897.1| protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain