Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene72041 SustainPine v3.0 323
• AutoFact: 60S ribosomal protein L10a n=41 Tax=Euteleostomi RepID=RL10A_HUMAN 2.0e-38
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 4.118e-16
Putative N-terminus
sp_v3.0_unigene72435 SustainPine v3.0 219
• AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] dbj|BAC42190.1| unknown protein [Arabidopsis thaliana] gb|ABD85155.1| At4g38020 [Arabidopsis thaliana] gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis t 7.0e-11
• FL-Next: tr=tRNA/rRNA methyltransferase family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene72891 SustainPine v3.0 286
• AutoFact: putative tRNA/rRNA methyltransferase [Oryza sativa Japonica Group] 8.0e-25
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene74408 SustainPine v3.0 261
• AutoFact: PREDICTED: similar to L10a n=1 Tax=Hydra magnipapillata RepID=UPI0001927716 4.0e-19
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 2.573e-36
C-terminus
sp_v3.0_unigene74596 SustainPine v3.0 334
• AutoFact: arginine/serine rich splicing factor sf4/14, putative; K13096 splicing factor 4 8.0e-27
• FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Splicing factor 4-like protein 1.696e-09
Internal
sp_v3.0_unigene74900 SustainPine v3.0 333
• AutoFact: Ribosomal protein n=3 Tax=Chromadorea RepID=A8NG31_BRUMA 1.0e-23
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 6.55e-32
Putative N-terminus
sp_v3.0_unigene75058 SustainPine v3.0 266
• AutoFact: 60s ribosomal protein L10A n=1 Tax=Glossina morsitans morsitans RepID=D3TMC2_GLOMM 4.0e-29
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 1.605e-34
Internal
sp_v3.0_unigene75211 SustainPine v3.0 266
• AutoFact: [J] COG0219 Predicted rRNA methylase (SpoU class) 6.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene75581 SustainPine v3.0 179
• AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 1.0e-16
• FL-Next: sp=Endoribonuclease Dicer homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75711 SustainPine v3.0 317
• AutoFact: cleavage stimulation factor 77 [Arabidopsis thaliana] 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene75805 SustainPine v3.0 354
• AutoFact: Polynucleotide phosphorylase n=1 Tax=Pisum sativum RepID=O24288_PEA 4.0e-24
• FL-Next: tr=Polynucleotide phosphorylase; Pisum sativum (Garden pea). 0.0
• Sma3: Polynucleotide phosphorylase 1.122e-08
Internal
sp_v3.0_unigene75827 SustainPine v3.0 209
• AutoFact: polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB87625.1| polynucleotide phosphorylase [Arabidop 1.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene76465 SustainPine v3.0 270
• AutoFact: Endoribonuclease Dicer homolog 3a n=1 Tax=Oryza sativa Japonica Group RepID=DCL3A_ORYSJ 1.0e-28
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Ribonuclease III, putative 1.236e-07
Internal
sp_v3.0_unigene77025 SustainPine v3.0 201
• AutoFact: Chain A, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome pdb|3IZR|A Chain A, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Tra 4.0e-16
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 5.82e-30
Internal
sp_v3.0_unigene77195 SustainPine v3.0 206
• AutoFact: RNAse E/G-like protein n=8 Tax=Arabidopsis RepID=F4IV66_ARATH 7.0e-12
• FL-Next: tr=RNAse E/G-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative ribonuclease E 9.576e-10
Internal
sp_v3.0_unigene77291 SustainPine v3.0 312
• AutoFact: 50S ribosomal protein L1 n=1 Tax=Zea mays RepID=B6TB66_MAIZE 6.0e-16
• FL-Next: sp=Ribosomal protein; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
C-terminus
sp_v3.0_unigene77354 SustainPine v3.0 296
• AutoFact: Unassigned protein
• FL-Next: sp=Putative metallophosphoesterase At3g03305; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene77787 SustainPine v3.0 336
• AutoFact: pre-mRNA splicing factor SYF1 [Neurospora crassa OR74A] sp|Q7SAK5.1|SYF1_NEUCR RecName: Full=Pre-mRNA-splicing factor syf-1 gb|EAA33470.1| pre-mRNA splicing factor SYF1 [Neurospora crassa OR74A] emb|CAE85536.1| conserved hypothetical protein [Neurospora c 0.0
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene77834 SustainPine v3.0 341
• AutoFact: Exosome component 4 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NCK3_COPC7 5.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene78565 SustainPine v3.0 251
• AutoFact: Ribosomal protein n=1 Tax=Picea sitchensis RepID=A9P244_PICSI 5.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 50S ribosomal protein L1, chloroplastic 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain