Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: large ribosomal subunit

Term: GO:0015934  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene126631 SustainPine v3.0 898
AutoFact: 60S ribosomal protein L26-2 n=2 Tax=Arabidopsis RepID=RL262_ARATH 8.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene127099 SustainPine v3.0 1218
AutoFact: 60S ribosomal protein L7 n=1 Tax=Elaeis guineensis RepID=B3TLT9_ELAGV 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7 3.428e-15
Putative Complete
sp_v3.0_unigene127389 SustainPine v3.0 986
AutoFact: Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=SODC_PINSY 0.0
FL-Next: sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine). 0.0
Sma3: Superoxide dismutase [Cu-Zn] 0.0
Complete
sp_v3.0_unigene127467 SustainPine v3.0 874
AutoFact: Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=SODC_PINSY 0.0
FL-Next: sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine). 0.0
Sma3: Superoxide dismutase [Cu-Zn] 0.0
Complete
sp_v3.0_unigene128229 SustainPine v3.0 509
Sma3: 60S ribosomal protein L26 3.239e-11
coding
sp_v3.0_unigene140481 SustainPine v3.0 514
AutoFact: Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=SODC_PINSY 0.0
FL-Next: sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine). 0.0
Sma3: Superoxide dismutase [Cu-Zn] 0.0
Putative Complete
sp_v3.0_unigene140484 SustainPine v3.0 568
AutoFact: Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=SODC_PINSY 0.0
FL-Next: sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine). 0.0
Sma3: Superoxide dismutase [Cu-Zn] 0.0
Putative Complete
sp_v3.0_unigene142521 SustainPine v3.0 525
AutoFact: Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=SODC_PINSY 0.0
FL-Next: sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine). 0.0
Sma3: Superoxide dismutase [Cu-Zn] 0.0
N-terminus
sp_v3.0_unigene143045 SustainPine v3.0 282
AutoFact: Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=SODC_PINSY 5.0e-23
FL-Next: sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine). 0.0
Sma3: Superoxide dismutase [Cu-Zn] 0.0
N-terminus
sp_v3.0_unigene143397 SustainPine v3.0 510
AutoFact: Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=SODC_PINSY 0.0
FL-Next: sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine). 0.0
Sma3: Superoxide dismutase [Cu-Zn] 0.0
Putative Complete
sp_v3.0_unigene143436 SustainPine v3.0 364
AutoFact: CuZn-superoxide dismutase 3 n=2 Tax=Haberlea rhodopensis RepID=F1CYZ2_9LAMI 1.0e-21
FL-Next: sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine). 0.0
Sma3: Superoxide dismutase [Cu-Zn] 0.0
Complete
sp_v3.0_unigene143931 SustainPine v3.0 455
AutoFact: Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=Q944B7_PINPS 0.0
FL-Next: sp=Superoxide dismutase [Cu-Zn]; Pinus pinaster (Maritime pine). 0.0
Sma3: Superoxide dismutase [Cu-Zn] 0.0
C-terminus
sp_v3.0_unigene144451 SustainPine v3.0 313
AutoFact: 60S ribosomal protein L13a n=3 Tax=Papilionoideae RepID=RL13A_LUPLU 6.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L13a 3.061e-16
Internal
sp_v3.0_unigene144778 SustainPine v3.0 602
AutoFact: ribosomal protein L17-1 [Poa secunda] 4.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S29 2.935e-20
Complete
sp_v3.0_unigene145010 SustainPine v3.0 389
AutoFact: ribosomal protein L17-1 [Poa secunda] 2.0e-28
FL-Next: sp=60S ribosomal protein L17-2; Hordeum vulgare (Barley). 0.0
Sma3: 60S ribosomal protein L17-2 2.145e-08
C-terminus
sp_v3.0_unigene145207 SustainPine v3.0 523
AutoFact: Ribosomal petrp-like protein n=2 Tax=asterids RepID=F4YF96_CAMSI 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L17-2 2.159e-08
Misassembled
sp_v3.0_unigene149733 SustainPine v3.0 210
AutoFact: 60S ribosomal protein L13a n=3 Tax=Picea RepID=RL13A_PICMA 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L13a 7.688e-21
N-terminus
sp_v3.0_unigene150221 SustainPine v3.0 473
AutoFact: 60S ribosomal protein L17-2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0N014_PHYIT 8.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L17-2 2.074e-08
C-terminus
sp_v3.0_unigene150388 SustainPine v3.0 395
AutoFact: putative L24 ribosomal protein [Ipomoea batatas] 6.99949e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L26 6.311e-11
Putative Complete
sp_v3.0_unigene150484 SustainPine v3.0 350
AutoFact: 60S ribosomal protein L26-2 [Arabidopsis thaliana] sp|Q9FJX2.1|RL262_ARATH RecName: Full=60S ribosomal protein L26-2 dbj|BAB08459.1| 60S ribosomal protein L26 [Arabidopsis thaliana] gb|AAL38285.1| 60S ribosomal protein L26 [Arabidopsis thaliana] gb|AAM101 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain