Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene87 SustainPine v3.0 1726
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.5e-17
Putative N-terminus
sp_v3.0_unigene126 SustainPine v3.0 1931
AutoFact: paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] sp|Q9LFQ3.2|SNL2_ARATH RecName: Full=Paired amphipathic helix protein Sin3-like 2 gb|AED92105.1| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative histone deacetylase complex, SIN3 component 2.932e-16
Putative Complete
sp_v3.0_unigene143 SustainPine v3.0 1912
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RZ39_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: NAC domain protein, IPR003441 0.0
Complete
sp_v3.0_unigene162 SustainPine v3.0 3761
AutoFact: transcriptional co-repressor -like [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Paired amphipathic helix protein Sin3-like 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SIN3 component, histone deacetylase complex 5.308e-09
C-terminus
sp_v3.0_unigene177 SustainPine v3.0 803
AutoFact: type II homeodomain-leucine zipper protein [Medicago sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Homeobox protein, putative 7.944e-17
C-terminus
sp_v3.0_unigene184 SustainPine v3.0 2539
AutoFact: Putative auxin response factor 10/16/17 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY1_CYCRU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxin response factor, putative 2.591e-12
Complete
sp_v3.0_unigene188 SustainPine v3.0 1388
AutoFact: putative phosphate/phosphoenolpyruvate translocator protein [Arabidopsis thaliana] sp|Q9SKJ7.1|PT225_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At2g25520 gb|AAD20711.1| putative phosphate/phosphoenolpyruvate translocator protein [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Plastidic phosphate translocator-like protein1 1.721e-10
Complete
sp_v3.0_unigene190 SustainPine v3.0 1747
AutoFact: histone deacetylase 15 [Arabidopsis thaliana] gb|AEE76110.1| histone deacetylase 15 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone deacetylase 4.049e-14
C-terminus
sp_v3.0_unigene200 SustainPine v3.0 3499
AutoFact: Myc2 bHLH protein n=2 Tax=Vitis vinifera RepID=A6NAB4_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA binding protein, putative 5.157e-06
Complete
sp_v3.0_unigene252 SustainPine v3.0 1729
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 2.211e-18
Complete
sp_v3.0_unigene359 SustainPine v3.0 819
AutoFact: ethylene-responsive transcription factor WRI1 [Arabidopsis thaliana] gb|AEE79213.1| ethylene-responsive transcription factor WRI1 [Arabidopsis thaliana] 0.0
FL-Next: tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: AP2 domain-containing transcription factor 0.0
Internal
sp_v3.0_unigene382 SustainPine v3.0 964
AutoFact: ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8RBJ7_SELML 0.0
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
C-terminus
sp_v3.0_unigene405 SustainPine v3.0 641
AutoFact: TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens] 1.0e-28
FL-Next: tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Homeobox protein, putative 1.5e-17
N-terminus
sp_v3.0_unigene450 SustainPine v3.0 3790
AutoFact: Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8V3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LIGULELESS1 protein, putative 6.394e-18
Putative C-terminus
sp_v3.0_unigene462 SustainPine v3.0 810
AutoFact: ribosomal RNA small subunit methyltransferase B [Arabidopsis thaliana] gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana] gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana] dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis th 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene472 SustainPine v3.0 1721
AutoFact: Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SNS7_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 2.959e-21
Complete
sp_v3.0_unigene493 SustainPine v3.0 1932
AutoFact: zinc finger protein 4 [Arabidopsis thaliana] sp|Q39263.2|ZFP4_ARATH RecName: Full=Zinc finger protein 4 gb|AAG51296.1|AC026480_3 C2H2-type zinc finger protein, putative [Arabidopsis thaliana] gb|AAK32798.1|AF361630_1 At1g66140/F15E12_19 [Arabidopsis thali 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene560 SustainPine v3.0 2467
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 9.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: YA5 4.993e-08
Complete
sp_v3.0_unigene568 SustainPine v3.0 1819
AutoFact: pfam00400, WD40, WD domain, G-beta repeat 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 2.346e-14
Putative Complete
sp_v3.0_unigene605 SustainPine v3.0 2352
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 0.0
FL-Next: sp=Transcription factor bHLH49; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: BHLH transcription factor 8.684e-15
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain