Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene3259 SustainPine v3.0 1762
• AutoFact: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SWQ3_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Phototropin 2.094e-39
C-terminus
sp_v3.0_unigene3264 SustainPine v3.0 1381
• AutoFact: Protein ULTRAPETALA 1 n=3 Tax=Arabidopsis RepID=ULT1_ARATH 3.9937e-43
• FL-Next: sp=Protein ULTRAPETALA 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene3289 SustainPine v3.0 3041
• AutoFact: phaseolin G-box binding protein PG1 [Phaseolus vulgaris] 0.0
• FL-Next: tr=JAMYC; Taxus cuspidata (Japanese yew). 0.0
• Sma3: MYC transcription factor 1.842e-08
C-terminus
sp_v3.0_unigene3305 SustainPine v3.0 4215
• AutoFact: ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AED91040.1| ubiq 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 1.959e-11
Complete
sp_v3.0_unigene3315 SustainPine v3.0 1607
• AutoFact: ZF-HD homeobox protein [Flaveria bidentis] 9.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zinc finger-homeodomain protein 1 1.381e-24
C-terminus
sp_v3.0_unigene3321 SustainPine v3.0 605
• AutoFact: FAP multi-domain protein 5.0e-20
• Sma3: Glycine-rich protein 5.632e-13
coding
sp_v3.0_unigene3385 SustainPine v3.0 1000
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 4.808e-22
Putative C-terminus
sp_v3.0_unigene3398 SustainPine v3.0 996
• AutoFact: Plastidic phosphate translocator-like protein1 n=1 Tax=Mesembryanthemum crystallinum RepID=Q59IV6_MESCR 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Plastidic phosphate translocator-like protein1 4.196e-11
C-terminus
sp_v3.0_unigene3436 SustainPine v3.0 1682
• AutoFact: RecName: Full=Homeobox-leucine zipper protein HOX11; AltName: Full=HD-ZIP protein HOX11; AltName: Full=Homeodomain transcription factor HOX11; AltName: Full=OsHox11 dbj|BAD38229.1| putative homeodomain leucine zipper protein CPHB-3 [Oryza sativa Japonica 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene3439 SustainPine v3.0 1860
• AutoFact: Aprataxin, putative n=1 Tax=Ricinus communis RepID=B9SWY0_RICCO 0.0
• FL-Next: sp=Transcription factor bHLH140; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene3444 SustainPine v3.0 3832
• AutoFact: Bel1 homeotic protein, putative n=1 Tax=Ricinus communis RepID=B9SDI4_RICCO 0.0
• FL-Next: tr=Homeobox transcription factor KN4; Picea mariana (Black spruce) (Abies mariana). 0.0
• Sma3: Associated with HOX family protein, expressed 6.029e-15
Complete
sp_v3.0_unigene3463 SustainPine v3.0 1474
• AutoFact: Putative wuschel homeobox protein WOX8/9 n=1 Tax=Picea abies RepID=D5LMH9_PICAB 0.0
• FL-Next: sp=WUSCHEL-related homeobox 11; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative wuschel homeobox protein 5.629e-07
Complete
sp_v3.0_unigene3467 SustainPine v3.0 2205
• AutoFact: NAC domain containing protein 28 [Arabidopsis thaliana] gb|AAF06052.1|AC009513_8 Contains similarity to gb|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb|AEE34440.1| NAC domain containing protein 28 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NAC domain protein, IPR003441 0.0
N-terminus
sp_v3.0_unigene3491 SustainPine v3.0 938
• AutoFact: MADS-box transcription factor n=4 Tax=Spermatophyta RepID=Q8LKX2_9SPER 0.0
• FL-Next: tr=MADS box protein; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: AGAMOUS-like protein 3.515e-38
Putative Complete
sp_v3.0_unigene3502 SustainPine v3.0 2477
• AutoFact: putative ribosomal-protein S6 kinase-like protein [Solanum lycopersicum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Phototropin 4.206e-17
Complete
sp_v3.0_unigene3515 SustainPine v3.0 653
• AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
• FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Phytochrome C 0.0
Internal
sp_v3.0_unigene3537 SustainPine v3.0 2195
• AutoFact: flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Putative ankyrin-kinase 2.36e-18
Complete
sp_v3.0_unigene3548 SustainPine v3.0 905
• AutoFact: STYLOSA protein n=1 Tax=Antirrhinum majus RepID=Q6H976_ANTMA 0.0
• FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene3617 SustainPine v3.0 2759
• AutoFact: Timing of CAB expression 1 protein n=1 Tax=Castanea sativa RepID=Q56TL2_CASSA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Timing of CAB expression 1 4.169e-09
Complete
sp_v3.0_unigene3638 SustainPine v3.0 1240
• AutoFact: Putative wuschel homeobox protein WOX8/9 n=1 Tax=Picea abies RepID=D5LMH9_PICAB 2.0e-39
• FL-Next: tr=Putative wuschel homeobox protein WOX8/9; Picea abies (Norway spruce) (Picea excelsa). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain