Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene207952 SustainPine v3.0 324
AutoFact: Myb transcription factor n=1 Tax=Solenostemon scutellarioides RepID=A5A381_SOLSC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Myb protein 2.916e-09
Putative N-terminus
sp_v3.0_unigene208031 SustainPine v3.0 238
AutoFact: MSI type nucleosome/chromatin assembly factor C, putative n=2 Tax=Oryza sativa Japonica Group RepID=Q6ASS7_ORYSJ 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.08e-09
C-terminus
sp_v3.0_unigene208227 SustainPine v3.0 470
AutoFact: Unassigned protein 4.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene208239 SustainPine v3.0 220
AutoFact: Ribosome recycling factor, putative n=1 Tax=Ricinus communis RepID=B9RBL6_RICCO 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative ribosome recycling factor 2.356e-09
C-terminus
sp_v3.0_unigene208246 SustainPine v3.0 160
AutoFact: Unassigned protein 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene208272 SustainPine v3.0 596
AutoFact: Histone deacetylase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U4N6_VITVI 0.0
FL-Next: sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 3.96708e-42
Internal
sp_v3.0_unigene208384 SustainPine v3.0 544
AutoFact: Unassigned protein
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 15a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene208416 SustainPine v3.0 372
AutoFact: MSI type nucleosome/chromatin assembly factor C, putative n=2 Tax=Oryza sativa Japonica Group RepID=Q6ASS7_ORYSJ 5.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.08e-09
C-terminus
sp_v3.0_unigene208422 SustainPine v3.0 852
AutoFact: DUF822 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative mature anther-specific protein LAT61 3.495e-08
N-terminus
sp_v3.0_unigene208444 SustainPine v3.0 485
AutoFact: Homeobox transcription factor KN3 n=296 Tax=Pinaceae RepID=Q5SC63_PINTA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene208549 SustainPine v3.0 646
AutoFact: NAC protein n=2 Tax=Oryza sativa RepID=Q8H045_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 0.0
Putative Complete
sp_v3.0_unigene208583 SustainPine v3.0 664
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene208596 SustainPine v3.0 394
AutoFact: SCARECROW n=1 Tax=Pinus sylvestris RepID=Q0MRQ2_PINSY 0.0
FL-Next: tr=SCARECROW; Pinus sylvestris (Scots pine). 0.0
Sma3: GRAS family transcription factor 1.12e-20
Internal
sp_v3.0_unigene208683 SustainPine v3.0 407
AutoFact: transcriptional activator DEMETER [Arabidopsis thaliana] sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana] gb|AED90761.1| 5.60519e-45
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.514e-08
Internal
sp_v3.0_unigene208697 SustainPine v3.0 341
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 6.0e-25
FL-Next: sp=Histone deacetylase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 1.207e-15
N-terminus
sp_v3.0_unigene208703 SustainPine v3.0 323
AutoFact: PHD domain containing protein 2.0e-10
FL-Next: sp=Homeobox protein HOX1A; Zea mays (Maize). 0.0
Sma3: Pathogenesis-related homeodomain protein 1.514e-08
Internal
sp_v3.0_unigene208713 SustainPine v3.0 290
AutoFact: MADS-box gene 2 protein [Lycopodium annotinum] 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene208714 SustainPine v3.0 289
AutoFact: Putative MADS box transcription factor PrMADS4 n=1 Tax=Pinus radiata RepID=O24488_PINRA 1.0e-33
FL-Next: tr=Putative MADS box transcription factor PrMADS8; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Internal
sp_v3.0_unigene208788 SustainPine v3.0 228
AutoFact: Putative phosphate transporter n=1 Tax=Cryptomeria japonica RepID=Q1XG57_CRYJA 2.0e-08
FL-Next: tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Phosphate transporter 8.042e-33
N-terminus
sp_v3.0_unigene208871 SustainPine v3.0 98
AutoFact: Serine hydroxymethyltransferase n=4 Tax=Arabidopsis RepID=Q8GRI1_ARATH 1.0e-10
FL-Next: sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine hydroxymethyltransferase 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain