Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene197233 SustainPine v3.0 474
AutoFact: MYB transcription factor MYB71 [Glycine max] 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene197964 SustainPine v3.0 161
AutoFact: transcription factor DcMYB5 [Daucus carota] 2.0e-15
FL-Next: tr=MYB-like protein; Taxus globosa. 0.0
Sma3: R2r3-myb transcription factor, putative 3.188e-08
Internal
sp_v3.0_unigene198271 SustainPine v3.0 399
AutoFact: Unassigned protein 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene198835 SustainPine v3.0 362
AutoFact: bHLH transcription factor-like protein [Oryza sativa Japonica Group] dbj|BAD30671.1| bHLH transcription factor-like protein [Oryza sativa Japonica Group] 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription factor, putative 1.011e-08
C-terminus
sp_v3.0_unigene199222 SustainPine v3.0 226
AutoFact: putative auxin response factor 1 [Oryza sativa Indica Group] 1.0e-10
FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
Sma3: Auxin response factor, putative 2.161e-12
Internal
sp_v3.0_unigene199272 SustainPine v3.0 330
AutoFact: GRAS family transcription factor LATERAL n=1 Tax=Populus trichocarpa RepID=B9GHZ4_POPTR 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene199445 SustainPine v3.0 526
AutoFact: RVT_2 domain containing protein 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.465e-26
Internal
sp_v3.0_unigene199484 SustainPine v3.0 670
AutoFact: Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas macleodii str. 'Deep ecotype'] gb|AEA99339.1| Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas macleodii str. 'Deep ecotype'] 3.0e-21
FL-Next: sp=Two-component response regulator ARR22; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene199517 SustainPine v3.0 450
AutoFact: PREDICTED: ripening-related bZIP protein-like isoform 2 [Vitis vinifera] ref|XP_002284785.1| PREDICTED: ripening-related bZIP protein-like isoform 1 [Vitis vinifera] emb|CAB85632.1| putative ripening-related bZIP protein [Vitis vinifera] 1.0e-21
FL-Next: sp=ABSCISIC ACID-INSENSITIVE 5-like protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: BZIP transcription factor ABI5 6.972e-12
Internal
sp_v3.0_unigene199853 SustainPine v3.0 445
AutoFact: Transcription factor, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MTK5_PHYIT 2.0e-30
FL-Next: tr=E2F-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Transcription factor E2F 1.233e-29
N-terminus
sp_v3.0_unigene200362 SustainPine v3.0 391
AutoFact: histone chaperone ASF1, putative [Aspergillus clavatus NRRL 1] gb|EAW09680.1| histone chaperone ASF1, putative [Aspergillus clavatus NRRL 1] 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone chaperone 6.045e-16
N-terminus
sp_v3.0_unigene200447 SustainPine v3.0 344
AutoFact: Proteasome subunit beta type n=1 Tax=Chlorella variabilis RepID=E1Z8Y2_9CHLO 2.0e-38
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Proteasome subunit beta type-6 4.947e-08
C-terminus
sp_v3.0_unigene200893 SustainPine v3.0 457
AutoFact: AP2 domain transcription factor RAP2 n=1 Tax=Cucumis melo subsp. melo RepID=E5GB56_CUCME 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 6.005e-38
Internal
sp_v3.0_unigene201160 SustainPine v3.0 424
AutoFact: Kinesin-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FME7_ARATH 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinesin-like protein 1.616e-30
Internal
sp_v3.0_unigene201866 SustainPine v3.0 181
AutoFact: Calmodulin-binding transcription activator 5 n=2 Tax=Arabidopsis RepID=CMTA5_ARATH 4.0e-23
FL-Next: sp=Calmodulin-binding transcription activator 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Calmodulin-binding transcription activator (Camta), plants, putative 1.714e-10
Internal
sp_v3.0_unigene201885 SustainPine v3.0 819
AutoFact: Ras-related protein Rab-18 [Arabidopsis thaliana] ref|NP_001077675.1| Ras-related protein Rab-18 [Arabidopsis thaliana] ref|NP_001117435.1| Ras-related protein Rab-18 [Arabidopsis thaliana] sp|O23657.1|RABC1_ARATH RecName: Full=Ras-related protein RABC1; 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab18/RabC-family small GTPase 1.124e-19
Putative Complete
sp_v3.0_unigene201923 SustainPine v3.0 885
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.093e-28
Internal
sp_v3.0_unigene201925 SustainPine v3.0 931
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene201987 SustainPine v3.0 669
AutoFact: Myb transcription factor n=1 Tax=Solenostemon scutellarioides RepID=A5A381_SOLSC 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: R2r3-myb transcription factor, putative 1.07e-15
N-terminus
sp_v3.0_unigene202053 SustainPine v3.0 1001
AutoFact: NAC protein n=2 Tax=Oryza sativa RepID=Q8H045_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain