Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene194812 SustainPine v3.0 241
• AutoFact: GAGA-motif binding transcriptional activator n=2 Tax=Populus trichocarpa RepID=A8D1A0_POPTR 3.0e-18
• FL-Next: tr=GAGA-binding transcriptional activator; Pinus taeda (Loblolly pine). 0.0
• Sma3: GAGA-binding transcriptional activator 1.32e-28
Internal
sp_v3.0_unigene194919 SustainPine v3.0 403
• AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
• FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Phytochrome A 0.0
Internal
sp_v3.0_unigene194972 SustainPine v3.0 390
• AutoFact: Auxin-induced protein 4 n=1 Tax=Pinus taeda RepID=Q7XYT3_PINTA 9.0e-23
• FL-Next: tr=Auxin-induced protein 4; Pinus taeda (Loblolly pine). 0.0
• Sma3: Aux/IAA protein 5.893e-30
C-terminus
sp_v3.0_unigene195195 SustainPine v3.0 533
• AutoFact: Chromatin remodeling 38 n=5 Tax=Camelineae RepID=Q9M297_ARATH 3.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromatin remodeling complex subunit 3.305e-08
Putative C-terminus
sp_v3.0_unigene195356 SustainPine v3.0 306
• AutoFact: Ethylene responsive transcription factor 1a n=1 Tax=Prunus salicina RepID=C0J9I9_9ROSA 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 1.56385e-42
Internal
sp_v3.0_unigene195377 SustainPine v3.0 362
• AutoFact: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SEN4_RICCO 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/threonine protein kinase, putative 5.928e-30
Internal
sp_v3.0_unigene195442 SustainPine v3.0 258
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RWI9_RICCO 6.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA binding protein, putative 4.054e-11
Internal
sp_v3.0_unigene195445 SustainPine v3.0 210
• AutoFact: Histidine kinase 1 plant, putative n=1 Tax=Ricinus communis RepID=B9SUH7_RICCO 1.0e-21
• FL-Next: sp=Histidine kinase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Histidine kinase 1 plant, putative 2.205e-11
Internal
sp_v3.0_unigene195459 SustainPine v3.0 262
• AutoFact: ubiquitin ligase protein cop1, putative (EC:1.3.1.74); K10143 E3 ubiquitin-protein ligase RFWD2 [EC:6.3.2.19] 4.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 8.451e-11
Internal
sp_v3.0_unigene195973 SustainPine v3.0 372
• AutoFact: Protein kinase KIPK n=2 Tax=Andropogoneae RepID=B6SYF7_MAIZE 8.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Phototropin 9.992e-30
Internal
sp_v3.0_unigene196190 SustainPine v3.0 266
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SJT2_ARATH 5.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.862e-16
Internal
sp_v3.0_unigene196426 SustainPine v3.0 336
• AutoFact: FACT complex subunit SPT16 n=4 Tax=Oryza sativa RepID=SPT16_ORYSJ 3.0e-27
• FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Facilitates chromatin transcription complex subunit SPT16 2.662e-13
Internal
sp_v3.0_unigene196430 SustainPine v3.0 401
• AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 2.00386e-43
• FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
• Sma3: p300/CBP acetyltransferase-related protein 8.619e-09
C-terminus
sp_v3.0_unigene196620 SustainPine v3.0 280
• AutoFact: R2R3-MYB transcription factor MYB11 n=1 Tax=Picea glauca RepID=A5JYF5_PICGL 2.0e-14
• FL-Next: tr=R2R3-MYB transcription factor MYB11; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: MYB transcription factor 4.192e-16
N-terminus
sp_v3.0_unigene196697 SustainPine v3.0 412
• AutoFact: WRKY transcription factor 1 (Fragment) n=1 Tax=Picea abies RepID=B2KZJ7_PICAB 9.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WRKY transcription factor 5 2.401e-07
Internal
sp_v3.0_unigene196737 SustainPine v3.0 373
• AutoFact: R2R3 transcription factor MYB108-like protein 1 n=3 Tax=Vitis vinifera RepID=C3W4Q3_VITVI 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 3.451e-33
N-terminus
sp_v3.0_unigene196790 SustainPine v3.0 410
• AutoFact: cold inducible histidine kinase 1 [Catharanthus roseus] 4.0e-14
• FL-Next: sp=Histidine kinase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Histidine kinase osmosensor protein 2.783e-09
Internal
sp_v3.0_unigene196894 SustainPine v3.0 554
• AutoFact: MADS-box transcription factor FBP22 n=1 Tax=Petunia x hybrida RepID=Q9ATE7_PETHY 4.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AGAMOUS-like protein 1.154e-24
N-terminus
sp_v3.0_unigene197115 SustainPine v3.0 321
• AutoFact: MYB transcription factor MYB92 [Glycine max] 1.00053e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 1.455e-11
Putative N-terminus
sp_v3.0_unigene197186 SustainPine v3.0 261
• AutoFact: putative AP2 domain transcription factor [Arabidopsis thaliana] 2.0e-24
• FL-Next: tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: AP2 domain-containing transcription factor 4.217e-12
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain