Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene6229 SustainPine v3.0 1586
• AutoFact: transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana] gb|AAM61618.1| unknown [Arabidopsis thaliana] gb|ABE77412.1| At1g18340 [Arabidopsis thaliana] gb|AEE29705.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6246 SustainPine v3.0 2090
• AutoFact: WRKY transcription factor 1 [Physcomitrella patens] gb|AAL78681.1| WRKY transcription factor 1 [Physcomitrella patens] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WRKY transcription factor, putative 2.156e-17
Complete
sp_v3.0_unigene6291 SustainPine v3.0 1531
• AutoFact: transcription factor ABORTED MICROSPORES [Arabidopsis thaliana] sp|Q9ZVX2.2|AMS_ARATH RecName: Full=Transcription factor ABORTED MICROSPORES; AltName: Full=Basic helix-loop-helix protein 21; Short=AtbHLH21; Short=bHLH 21; AltName: Full=Transcription facto 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene6303 SustainPine v3.0 821
• AutoFact: pfam00046, Homeobox, Homeobox domain 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Homeobox protein, putative 3.313e-06
N-terminus
sp_v3.0_unigene6334 SustainPine v3.0 3350
• AutoFact: BAH and TFIIS domain-containing protein [Arabidopsis thaliana] emb|CAB41133.1| putative protein [Arabidopsis thaliana] gb|AEE78362.1| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene6360 SustainPine v3.0 2120
• AutoFact: putative transcription factor BHLH10 [Arabidopsis thaliana] gb|AAD20667.1| unknown protein [Arabidopsis thaliana] 4.00001e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene6364 SustainPine v3.0 933
• AutoFact: transcription factor bHLH30 [Arabidopsis thaliana] sp|Q9S7Y1.1|BH030_ARATH RecName: Full=Transcription factor bHLH30; AltName: Full=Basic helix-loop-helix protein 30; Short=AtbHLH30; Short=bHLH 30; AltName: Full=Transcription factor EN 53; AltName: Full=b 5.0e-40
• FL-Next: sp=Transcription factor bHLH30; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA binding protein, putative 1.132e-07
Putative N-terminus
sp_v3.0_unigene6370 SustainPine v3.0 2418
• AutoFact: protease Do-like 2 [Arabidopsis thaliana] sp|O82261.2|DEGP2_ARATH RecName: Full=Protease Do-like 2, chloroplastic; Flags: Precursor gb|AAG41447.1|AF326865_1 putative DegP2 protease [Arabidopsis thaliana] gb|AAK14061.1|AF245171_1 DegP2 protease [Arabidopsi 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine endopeptidase degp2, putative 2.995e-19
Complete
sp_v3.0_unigene6386 SustainPine v3.0 1646
• AutoFact: NADH-cytochrome b5 reductase-like protein [Arabidopsis thaliana] sp|P83291.2|NCB5R_ARATH RecName: Full=NADH-cytochrome b5 reductase-like protein; Short=B5R gb|AAM64833.1| cytochrome-b5 reductase-like protein [Arabidopsis thaliana] gb|ABD59058.1| At5g20080 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NADH-cytochrome b5 reductase-like protein 1.353e-11
Complete
sp_v3.0_unigene6388 SustainPine v3.0 2900
• AutoFact: WRKY transcription factor PmWRKY108 (Fragment) n=2 Tax=Pinus monticola RepID=E6Y3E0_PINMO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WRKY transcription factor, putative 5.028e-13
Putative Complete
sp_v3.0_unigene6404 SustainPine v3.0 1294
• AutoFact: Transcription factor hy5, putative n=1 Tax=Ricinus communis RepID=B9RP68_RICCO 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene6406 SustainPine v3.0 3309
• AutoFact: DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] emb|CAL53063.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Complete
sp_v3.0_unigene6424 SustainPine v3.0 1758
• AutoFact: BZIP transcription factor n=2 Tax=core eudicotyledons RepID=Q93YM7_TOBAC 0.0
• FL-Next: sp=Light-inducible protein CPRF2; Petroselinum crispum (Parsley) (Petroselinum hortense). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene6444 SustainPine v3.0 1353
• AutoFact: class II KNOX homeobox transcription factor [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Class 1 knox protein 9.612e-15
C-terminus
sp_v3.0_unigene6469 SustainPine v3.0 2645
• AutoFact: DELLA protein n=2 Tax=Malus x domestica RepID=Q0HA68_MALDO 0.0
• FL-Next: sp=DELLA protein GAI1; Vitis vinifera (Grape). 0.0
• Sma3: DELLA protein 1.59748e-43
Complete
sp_v3.0_unigene6503 SustainPine v3.0 1777
• AutoFact: Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SNS7_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 2.375e-21
Complete
sp_v3.0_unigene6522 SustainPine v3.0 1957
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RZ39_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: NAC domain protein, IPR003441 0.0
Complete
sp_v3.0_unigene6576 SustainPine v3.0 1061
• AutoFact: Dof domain zinc finger DNA-binding protein n=1 Tax=Picea abies RepID=Q14DX9_PICAB 3.0e-26
• FL-Next: tr=Dof domain zinc finger DNA-binding protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
C-terminus
sp_v3.0_unigene6577 SustainPine v3.0 2637
• AutoFact: phantastica-like MYB protein [Eschscholzia californica subsp. californica] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Phantastica transcription factor 2.67e-14
Complete
sp_v3.0_unigene6586 SustainPine v3.0 1576
• AutoFact: transcription factor PCF6 [Oryza sativa Japonica Group] 9.0e-17
• FL-Next: sp=Transcription factor PCF6; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: TCP family transcription factor containing protein 2.433e-11
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain