Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene183868 SustainPine v3.0 383
AutoFact: sensory transduction histidine kinase [Planctomyces maris DSM 8797] gb|EDL56931.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene183900 SustainPine v3.0 325
AutoFact: MYC transcription factor [Solanum tuberosum] 4.0e-34
FL-Next: tr=JAMYC; Taxus cuspidata (Japanese yew). 0.0
Sma3: DNA binding protein, putative 4.749e-08
Internal
sp_v3.0_unigene183974 SustainPine v3.0 333
AutoFact: Similar to peptide transporter [Arabidopsis thaliana] 3.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr18 scaffold_122, whole genome shotgun sequence 8.927e-27
Internal
sp_v3.0_unigene183994 SustainPine v3.0 438
AutoFact: Unassigned protein 3.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene184051 SustainPine v3.0 771
AutoFact: Auxin response factor 1 n=2 Tax=Gossypium RepID=Q3Y6G6_GOSBA 7.0e-09
FL-Next: sp=Auxin response factor 4; Oryza sativa subsp. japonica (Rice). 0.0
N-terminus
sp_v3.0_unigene184371 SustainPine v3.0 583
AutoFact: Unassigned protein 6.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene184414 SustainPine v3.0 919
AutoFact: Truncated MADS-box transcription factor (Fragment) n=3 Tax=Pinaceae RepID=C6F9J9_PSEMZ 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MADS box protein 1.358e-23
Complete
sp_v3.0_unigene184502 SustainPine v3.0 668
AutoFact: bZIP transcription factor bZIP124 [Glycine max] gb|ACU20693.1| unknown [Glycine max] 4.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene184580 SustainPine v3.0 520
AutoFact: Wound-responsive AP2 like factor 1 n=1 Tax=Nicotiana tabacum RepID=A4F248_TOBAC 6.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 4.964e-34
Putative N-terminus
sp_v3.0_unigene184962 SustainPine v3.0 499
AutoFact: B3 domain-containing transcription repressor VAL2 [Arabidopsis thaliana] sp|Q5CCK4.1|VAL2_ARATH RecName: Full=B3 domain-containing transcription repressor VAL2; AltName: Full=Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE-LIKE 1; AltName: Full=Protein V 5.0e-38
FL-Next: tr=VP1/ABI3-like protein; Callitropsis nootkatensis. 0.0
Sma3: Transcription factor, putative 9.846e-07
Internal
sp_v3.0_unigene185039 SustainPine v3.0 422
AutoFact: Nuclear transcription factor Y subunit C-2 n=2 Tax=Arabidopsis RepID=NFYC2_ARATH 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: HAP5 subunit of HAP complex 7.483e-08
N-terminus
sp_v3.0_unigene185047 SustainPine v3.0 401
AutoFact: MYB1 protein n=1 Tax=Gerbera hybrid cultivar RepID=Q70RD3_GERHY 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: R2r3-myb transcription factor, putative 2.172e-15
N-terminus
sp_v3.0_unigene185158 SustainPine v3.0 578
AutoFact: putative DegP2 protease [Oryza sativa Japonica Group] 2.0e-09
FL-Next: sp=Protease Do-like 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Serine endopeptidase degp2, putative 1.616e-08
C-terminus
sp_v3.0_unigene185339 SustainPine v3.0 493
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene185362 SustainPine v3.0 596
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome 1.28e-15
Internal
sp_v3.0_unigene185431 SustainPine v3.0 739
AutoFact: bZIP transcription factor ATB2 [Glycine max] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ocs element-binding factor, putative 2.287e-07
Complete
sp_v3.0_unigene185631 SustainPine v3.0 467
AutoFact: Transcriptional factor TINY, putative n=1 Tax=Ricinus communis RepID=B9RQZ6_RICCO 8.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 1.164e-13
N-terminus
sp_v3.0_unigene185811 SustainPine v3.0 456
AutoFact: pfam00010, HLH, Helix-loop-helix DNA-binding domain 3.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene185987 SustainPine v3.0 515
AutoFact: Histone deacetylase complex protein n=1 Tax=Populus trichocarpa RepID=B9GPT2_POPTR 4.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Sin3 complex component 8.127e-10
Putative Complete
sp_v3.0_unigene186330 SustainPine v3.0 432
AutoFact: Unassigned protein 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain