Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene171386 SustainPine v3.0 283
AutoFact: Herpes_gp2 multi-domain protein 2.0e-14
Sma3: Glycine-rich protein 9.342e-12
coding
sp_v3.0_unigene172387 SustainPine v3.0 208
AutoFact: Trypan_PARP multi-domain protein 3.0e-15
Sma3: Glycine-rich cell wall structural protein 1, putative 2.096e-08
coding
sp_v3.0_unigene172836 SustainPine v3.0 507
AutoFact: Gly_rich multi-domain protein 5.0e-20
Sma3: Glycine-rich protein 1.685e-10
coding
sp_v3.0_unigene173381 SustainPine v3.0 520
AutoFact: Gly_rich multi-domain protein 6.0e-19
Sma3: Putative glycine rich protein 3.78e-18
coding
sp_v3.0_unigene177415 SustainPine v3.0 228
putative_coding
sp_v3.0_unigene181484 SustainPine v3.0 303
putative_coding
sp_v3.0_unigene182894 SustainPine v3.0 1056
AutoFact: heat stress transcription factor B-4 [Arabidopsis thaliana] sp|Q9C635.1|HSFB4_ARATH RecName: Full=Heat stress transcription factor B-4; Short=AtHsfB4; AltName: Full=AtHsf-02 gb|AAG50634.1|AC083835_19 heat shock transcription factor, putative [Arabidopsis 7.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock factor protein, putative 1.025e-18
Putative N-terminus
sp_v3.0_unigene182936 SustainPine v3.0 431
AutoFact: Isoform 2 of Probable transcription factor KAN4 n=1 Tax=Arabidopsis thaliana RepID=Q9FJV5-2 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription factor, putative 4.61e-11
Internal
sp_v3.0_unigene183033 SustainPine v3.0 586
AutoFact: DUF679 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene183122 SustainPine v3.0 407
unknown
sp_v3.0_unigene183135 SustainPine v3.0 393
AutoFact: Unassigned protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene183327 SustainPine v3.0 686
AutoFact: Similar to peptide transporter [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr18 scaffold_122, whole genome shotgun sequence 5.884e-29
C-terminus
sp_v3.0_unigene183391 SustainPine v3.0 550
AutoFact: transcription factor RAX1 [Arabidopsis thaliana] sp|Q9FG68.1|RAX1_ARATH RecName: Full=Transcription factor RAX1; AltName: Full=Myb-related protein 37; Short=AtMYB37; AltName: Full=Protein REGULATOR OF AXILLARY MERISTEMS 1 dbj|BAB08873.1| myb-related trans 4.0e-09
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Typical P-type R2R3 Myb protein 1.098e-07
Complete
sp_v3.0_unigene183403 SustainPine v3.0 540
AutoFact: Putative MADS domain transcription factor GGM12 (Fragment) n=1 Tax=Gnetum gnemon RepID=Q9XGJ5_GNEGN 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene183435 SustainPine v3.0 438
Sma3: Type-b response regulator 2.204e-08
coding
sp_v3.0_unigene183484 SustainPine v3.0 428
AutoFact: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9GYE3_POPTR 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 0.0
Putative C-terminus
sp_v3.0_unigene183530 SustainPine v3.0 1031
AutoFact: protein TIFY 3B [Arabidopsis thaliana] sp|Q9C5K8.1|TIF3B_ARATH RecName: Full=Protein TIFY 3B; AltName: Full=Jasmonate ZIM domain-containing protein 12 gb|AAK25894.1|AF360184_1 unknown protein [Arabidopsis thaliana] gb|AAK93690.1| unknown protein [Arabidop 3.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene183681 SustainPine v3.0 584
AutoFact: Embryonic element binding Factor 8 (Fragment) n=1 Tax=Daucus carota RepID=A2V671_DAUCA 8.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene183805 SustainPine v3.0 389
AutoFact: Floricaula/leafy-like protein FL1 n=2 Tax=Pinaceae RepID=NEED_PINRA 0.0
FL-Next: sp=Floricaula/leafy-like protein FL1; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: NEEDLY-like protein 9.923e-14
Internal
sp_v3.0_unigene183843 SustainPine v3.0 503
AutoFact: [A] COG5239 mRNA deadenylase, exonuclease subunit and related nucleases 6.0e-05
FL-Next: Isoform 5 of Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana GN=CCR4-4 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain