Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene5040 SustainPine v3.0 912
• AutoFact: DNA-binding transcription factor blind 1 n=1 Tax=Gossypium hirsutum RepID=E7D5Q3_GOSHI 5.60519e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 1.382e-24
Internal
sp_v3.0_unigene5045 SustainPine v3.0 3143
• AutoFact: NAC domain containing protein 28 [Arabidopsis thaliana] gb|AAF06052.1|AC009513_8 Contains similarity to gb|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb|AEE34440.1| NAC domain containing protein 28 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NAC domain protein, IPR003441 0.0
Putative Complete
sp_v3.0_unigene5054 SustainPine v3.0 3611
• AutoFact: transcriptional co-repressor -like [Oryza sativa Japonica Group] 0.0
• FL-Next: sp=Paired amphipathic helix protein Sin3-like 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative histone deacetylase complex, SIN3 component 1.006e-16
C-terminus
sp_v3.0_unigene5131 SustainPine v3.0 2164
• AutoFact: transcription factor DP1 [Populus tremula x Populus tremuloides] gb|AAP73785.1| DP1 [Populus tremula x Populus tremuloides] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor Dp-1 3.035e-08
Complete
sp_v3.0_unigene5163 SustainPine v3.0 432
• AutoFact: TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens] 8.0e-17
• FL-Next: tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Homeobox protein, putative 4.063e-13
Putative N-terminus
sp_v3.0_unigene5314 SustainPine v3.0 3025
• AutoFact: WRKY DNA-binding protein [Nicotiana tabacum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WRKY transcription factor, putative 4.845e-13
Complete
sp_v3.0_unigene5324 SustainPine v3.0 2137
• AutoFact: RecName: Full=Importin subunit alpha; AltName: Full=Karyopherin subunit alpha; Short=KAP alpha gb|AAC23722.1| importin alpha [Solanum lycopersicum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Importin alpha, putative 8.841e-18
Complete
sp_v3.0_unigene5374 SustainPine v3.0 1037
• AutoFact: bHLH protein [Arabidopsis thaliana] 3.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Myc-like anthocyanin regulatory protein 2.131e-21
Complete
sp_v3.0_unigene5438 SustainPine v3.0 1248
• AutoFact: Ethylene-responsive transcription factor ERF036 n=2 Tax=Arabidopsis RepID=ERF36_ARATH 5.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor DREBIII-1 9.26e-06
Complete
sp_v3.0_unigene5446 SustainPine v3.0 1387
• AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9SRK5_PHYPA 1.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene5452 SustainPine v3.0 1388
• AutoFact: transcription factor bHLH66 [Arabidopsis thaliana] sp|Q9ZUG9.1|BH066_ARATH RecName: Full=Transcription factor bHLH66; AltName: Full=Basic helix-loop-helix protein 66; Short=AtbHLH66; Short=bHLH 66; AltName: Full=Transcription factor EN 95; AltName: Full=b 7.00649e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: BHLH transcription factor 1.921e-21
C-terminus
sp_v3.0_unigene5461 SustainPine v3.0 2085
• AutoFact: TPA_inf: class IV HD-Zip protein HDZ41 [Physcomitrella patens] 0.0
• FL-Next: tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Homeobox protein, putative 8.929e-18
C-terminus
sp_v3.0_unigene5483 SustainPine v3.0 1558
• AutoFact: AINTEGUMENTA-like protein n=1 Tax=Pinus thunbergii RepID=Q76H96_PINTH 0.0
• FL-Next: tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: AP2 domain-containing transcription factor 0.0
C-terminus
sp_v3.0_unigene5484 SustainPine v3.0 2879
• AutoFact: RecName: Full=Protein arginine N-methyltransferase 5; AltName: Full=Shk1 kinase-binding protein 1 homolog 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein arginine N-methyltransferase 3.206e-11
Complete
sp_v3.0_unigene5504 SustainPine v3.0 1404
• AutoFact: DNA-3-methyladenine glycosylase II [Arabidopsis thaliana] emb|CAB42917.1| putative DNA-3-methyladenine glycosidase [Arabidopsis thaliana] dbj|BAC43662.1| putative DNA-3-methyladenine glycosidase [Arabidopsis thaliana] gb|AAO63339.1| At3g50880 [Arabidopsis 0.0
• FL-Next: tr=HhH-GPD base excision DNA repair family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
• Sma3: DNA-3-methyladenine glycosylase, putative 1.014e-07
Complete
sp_v3.0_unigene5539 SustainPine v3.0 2764
• AutoFact: Chitin-inducible gibberellin-responsive protein, putative n=1 Tax=Ricinus communis RepID=B9S6I2_RICCO 0.0
• FL-Next: sp=Scarecrow-like protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: GRAS family transcription factor 5.898e-06
Complete
sp_v3.0_unigene5598 SustainPine v3.0 1449
• AutoFact: histone deacetylase 2 [Arabidopsis thaliana] sp|Q944K3.2|HDA2_ARATH RecName: Full=Histone deacetylase 2 gb|AED93517.1| histone deacetylase 2 [Arabidopsis thaliana] 0.0
• FL-Next: sp=Histone deacetylase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Class III RPD3 type histone deacetylase protein 9.277e-10
Complete
sp_v3.0_unigene5609 SustainPine v3.0 2223
• AutoFact: Putative auxin response factor 5/7 (Fragment) n=1 Tax=Gnetum gnemon RepID=E1UHX8_GNEGN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Auxin response factor, putative 1.157e-06
C-terminus
sp_v3.0_unigene5699 SustainPine v3.0 2149
• AutoFact: transcription factor DP1 [Populus tremula x Populus tremuloides] gb|AAP73785.1| DP1 [Populus tremula x Populus tremuloides] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor Dp-1 3.19e-08
Complete
sp_v3.0_unigene5710 SustainPine v3.0 2439
• AutoFact: Putative auxin response factor 5/7 (Fragment) n=1 Tax=Gnetum gnemon RepID=E1UHX8_GNEGN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain