Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene4433 SustainPine v3.0 1199
• AutoFact: transcription factor GAMYB [Triticum monococcum] 7.0e-34
• FL-Next: tr=R2R3-MYB transcription factor MYB1; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: MYB transcription factor 2.83e-14
Putative C-terminus
sp_v3.0_unigene4436 SustainPine v3.0 729
• AutoFact: AP2 domain containing protein 7.0e-07
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: Ethylene-responsive transcription factor 4 8.39e-22
Internal
sp_v3.0_unigene4481 SustainPine v3.0 868
• AutoFact: Putative MADS box transcription factor PrMADS6 n=2 Tax=Pinus radiata RepID=O24490_PINRA 0.0
• FL-Next: tr=Putative MADS box transcription factor PrMADS6; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: AGAMOUS-like protein 5.939e-30
Complete
sp_v3.0_unigene4492 SustainPine v3.0 345
• AutoFact: Unassigned protein
• FL-Next: sp=Histone-lysine N-methyltransferase EZA1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Polycomb group protein 3.006e-08
Internal
sp_v3.0_unigene4506 SustainPine v3.0 662
• AutoFact: CCT domain containing protein 2.0e-19
• FL-Next: tr=Zinc finger protein; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Constans-like protein 2.493e-21
C-terminus
sp_v3.0_unigene4542 SustainPine v3.0 1152
• AutoFact: syntaxin [Nicotiana benthamiana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Syntaxin, putative 1.43e-06
Complete
sp_v3.0_unigene4597 SustainPine v3.0 1131
• AutoFact: APETALA2-related transcription factor 2 n=1 Tax=Picea abies RepID=Q9FV33_PICAB 0.0
• FL-Next: tr=APETALA2-related transcription factor 2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: APETALA2-related transcription factor 2 2.924e-06
C-terminus
sp_v3.0_unigene4618 SustainPine v3.0 252
• AutoFact: LisH domain containing protein 1.0e-06
• FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Transcriptional corepressor LEUNIG 6.301e-12
N-terminus
sp_v3.0_unigene4619 SustainPine v3.0 248
• AutoFact: R2R3-MYB transcriptional factor n=1 Tax=Gentiana triflora RepID=A9ZMI4_GENTR 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 5.615e-11
Internal
sp_v3.0_unigene4654 SustainPine v3.0 259
• AutoFact: R2R3-MYB transcription factor MYB4 n=1 Tax=Picea glauca RepID=A5JYE8_PICGL 6.0e-23
• FL-Next: tr=R2R3-MYB transcription factor MYB4; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: MYB transcription factor 8.799e-25
N-terminus
sp_v3.0_unigene4737 SustainPine v3.0 427
• AutoFact: MYB domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ53_MALDO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Typical P-type R2R3 Myb protein 4.016e-11
N-terminus
sp_v3.0_unigene4746 SustainPine v3.0 517
• AutoFact: RecName: Full=Squamosa promoter-binding-like protein 15 sp|A2YX04.1|SPL15_ORYSI RecName: Full=Squamosa promoter-binding-like protein 15 dbj|BAD10073.1| putative SPL1-Related2 protein [Oryza sativa Japonica Group] gb|EAZ07615.1| hypothetical protein OsI_29 8.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Squamosa promoter-binding protein, putative 4.935e-23
Putative C-terminus
sp_v3.0_unigene4757 SustainPine v3.0 964
• AutoFact: Heat Shock Factor 3 [Arabidopsis thaliana] 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene4810 SustainPine v3.0 803
• AutoFact: Cell division control protein 15 , cdc15, putative n=1 Tax=Ricinus communis RepID=B9S4I8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative 2.409e-13
Internal
sp_v3.0_unigene4852 SustainPine v3.0 333
• AutoFact: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HGP8_POPTR 8.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 1.44e-39
N-terminus
sp_v3.0_unigene4888 SustainPine v3.0 180
• AutoFact: Unassigned protein
• FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Sma3: Repressor of silencing 1 9.077e-09
Internal
sp_v3.0_unigene4937 SustainPine v3.0 564
• AutoFact: Histidine kinase 2 (Fragment) n=1 Tax=Betula pendula RepID=B8QJH1_BETPN 1.0e-36
• FL-Next: sp=Histidine kinase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Histidine kinase 6.446e-32
Internal
sp_v3.0_unigene4972 SustainPine v3.0 744
• AutoFact: Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative n=1 Tax=Ricinus communis RepID=B9RTY0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative 7.883e-13
Internal
sp_v3.0_unigene4974 SustainPine v3.0 2436
• AutoFact: kinesin-related protein [Gossypium hirsutum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kinesin-like protein 5.996e-20
C-terminus
sp_v3.0_unigene4982 SustainPine v3.0 307
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S7A8_RICCO 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleic acid binding protein, putative 1.486e-20
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain