Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene4118 SustainPine v3.0 1238
• AutoFact: Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleosome/chromatin assembly factor group 2.433e-09
C-terminus
sp_v3.0_unigene4126 SustainPine v3.0 1157
• AutoFact: BZIP domain class transcription factor n=2 Tax=Malus x domestica RepID=D9ZIQ3_MALDO 3.99931e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: BZIP transcription factor 1.349e-14
C-terminus
sp_v3.0_unigene4134 SustainPine v3.0 1104
• AutoFact: Two-component sensor histidine kinase bacteria, putative n=1 Tax=Ricinus communis RepID=B9T4M7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Type-b response regulator 1.149e-32
Putative Complete
sp_v3.0_unigene4146 SustainPine v3.0 1434
• AutoFact: SCL domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJB4_MALDO 0.0
• FL-Next: tr=SHORT-ROOT-like protein; Pinus taeda (Loblolly pine). 0.0
• Sma3: GRAS family transcription factor 9.411e-06
C-terminus
sp_v3.0_unigene4156 SustainPine v3.0 1979
• AutoFact: pfam00170, bZIP_1, bZIP transcription factor 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene4164 SustainPine v3.0 1460
• AutoFact: NAC domain protein, IPR003441 n=1 Tax=Populus trichocarpa RepID=B9IJW7_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NAC domain protein, IPR003441 0.0
Complete
sp_v3.0_unigene4166 SustainPine v3.0 2860
• AutoFact: TGA-type basic leucine zipper protein TGA2.2 [Phaseolus vulgaris] 0.0
• FL-Next: sp=Transcription factor HBP-1b(c38); Triticum aestivum (Wheat). 0.0
• Sma3: BZIP transcription factor 5.361e-19
Complete
sp_v3.0_unigene4204 SustainPine v3.0 2098
• AutoFact: Embryonic flower 2 n=1 Tax=Yucca filamentosa RepID=Q1W6L0_YUCFI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Embryonic flower 2 1.009e-24
Complete
sp_v3.0_unigene4227 SustainPine v3.0 2357
• AutoFact: octopine synthase binding factor3 [Zea mays] emb|CAA48904.1| ocs-element binding factor 3.2 [Zea mays] 0.0
• FL-Next: sp=Transcription factor HBP-1b(c38); Triticum aestivum (Wheat). 0.0
• Sma3: BZIP transcription factor 5.361e-19
Complete
sp_v3.0_unigene4287 SustainPine v3.0 937
• AutoFact: Ser/Thr protein kinase isolog [Arabidopsis thaliana] 7.00005e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/threonine-protein kinase receptor 1.066e-06
C-terminus
sp_v3.0_unigene4289 SustainPine v3.0 525
• AutoFact: Os02g0203000 protein n=2 Tax=Oryza sativa RepID=Q0E2Y8_ORYSJ 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor HY5 1.887e-18
Putative Complete
sp_v3.0_unigene4326 SustainPine v3.0 822
• AutoFact: transcriptional activator DEMETER [Arabidopsis thaliana] sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana] gb|AED90761.1| 2.0e-11
• FL-Next: Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Sma3: Putative transcriptional activator DEMETER 4.891e-09
Internal
sp_v3.0_unigene4329 SustainPine v3.0 982
• AutoFact: MYB transcription factor MYB185 [Glycine max] 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 1.656e-22
N-terminus
sp_v3.0_unigene4346 SustainPine v3.0 574
• AutoFact: NAC domain containing protein 35 [Arabidopsis thaliana] gb|AAC78526.2| NAM (no apical meristem)-like protein [Arabidopsis thaliana] gb|AEC05582.1| NAC domain containing protein 35 [Arabidopsis thaliana] 4.00001e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NAC domain protein, IPR003441 0.0
Putative N-terminus
sp_v3.0_unigene4351 SustainPine v3.0 460
• AutoFact: NAC transcription factor NAM-1 [Hordeum vulgare subsp. vulgare] gb|ABY67949.1| NAM-1 [Hordeum vulgare subsp. vulgare] 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NAC domain protein 1.961e-37
N-terminus
sp_v3.0_unigene4381 SustainPine v3.0 609
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
N-terminus
sp_v3.0_unigene4407 SustainPine v3.0 153
• AutoFact: Dp_E2F-Like (IC) [Ostreococcus tauri] gb|AAV68606.1| DP-E2F-like protein [Ostreococcus tauri] emb|CAL55026.1| Dp_E2F-Like (IC) [Ostreococcus tauri] 1.0e-07
• FL-Next: Isoform 2 of E2F transcription factor-like E2FE OS=Arabidopsis thaliana GN=E2FE 0.0
Internal
sp_v3.0_unigene4413 SustainPine v3.0 714
• AutoFact: antitermination NusB domain-containing protein [Arabidopsis thaliana] gb|AAK96755.1| putative protein [Arabidopsis thaliana] gb|AAP42720.1| At4g26370 [Arabidopsis thaliana] gb|AEE85189.1| antitermination NusB domain-containing protein [Arabidopsis thalian 6.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene4424 SustainPine v3.0 891
• AutoFact: Putative MADS box transcription factor PrMADS9 n=1 Tax=Pinus radiata RepID=O24487_PINRA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MADS-box protein 1.935e-17
Putative Complete
sp_v3.0_unigene4432 SustainPine v3.0 452
• AutoFact: Transcriptional adapter ADA2 n=9 Tax=Poaceae RepID=TADA2_ORYSJ 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone acetyltransferase complex component 8.499e-20
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain