Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: sequence-specific DNA binding

Term: GO:0043565  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene183033 SustainPine v3.0 586
AutoFact: DUF679 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene183327 SustainPine v3.0 686
AutoFact: Similar to peptide transporter [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr18 scaffold_122, whole genome shotgun sequence 5.884e-29
C-terminus
sp_v3.0_unigene183403 SustainPine v3.0 540
AutoFact: Putative MADS domain transcription factor GGM12 (Fragment) n=1 Tax=Gnetum gnemon RepID=Q9XGJ5_GNEGN 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene183974 SustainPine v3.0 333
AutoFact: Similar to peptide transporter [Arabidopsis thaliana] 3.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr18 scaffold_122, whole genome shotgun sequence 8.927e-27
Internal
sp_v3.0_unigene184414 SustainPine v3.0 919
AutoFact: Truncated MADS-box transcription factor (Fragment) n=3 Tax=Pinaceae RepID=C6F9J9_PSEMZ 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MADS box protein 1.358e-23
Complete
sp_v3.0_unigene184446 SustainPine v3.0 484
AutoFact: endothelial differentiation-related factor 1 [synthetic construct] 6.0e-25
FL-Next: tr=ERTC; Zea mays (Maize). 0.0
Complete
sp_v3.0_unigene184502 SustainPine v3.0 668
AutoFact: bZIP transcription factor bZIP124 [Glycine max] gb|ACU20693.1| unknown [Glycine max] 4.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene184508 SustainPine v3.0 507
AutoFact: PREDICTED: cap binding protein 20-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBB931 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 4.622e-11
N-terminus
sp_v3.0_unigene184621 SustainPine v3.0 454
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 5.0e-40
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.666e-08
C-terminus
sp_v3.0_unigene185039 SustainPine v3.0 422
AutoFact: Nuclear transcription factor Y subunit C-2 n=2 Tax=Arabidopsis RepID=NFYC2_ARATH 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: HAP5 subunit of HAP complex 7.483e-08
N-terminus
sp_v3.0_unigene185431 SustainPine v3.0 739
AutoFact: bZIP transcription factor ATB2 [Glycine max] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ocs element-binding factor, putative 2.287e-07
Complete
sp_v3.0_unigene186330 SustainPine v3.0 432
AutoFact: Unassigned protein 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene186503 SustainPine v3.0 432
AutoFact: Mitochondrial pyruvate dehydrogenase kinase isoform 1 n=6 Tax=Papilionoideae RepID=A8I354_PEA 6.0e-22
FL-Next: tr=cDNA clone:J023007C01, full insert sequence; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Pyruvate dehydrogenase kinase 1.287e-25
C-terminus
sp_v3.0_unigene186908 SustainPine v3.0 466
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.7e-21
Putative Complete
sp_v3.0_unigene187353 SustainPine v3.0 274
AutoFact: Unassigned protein
FL-Next: tr=RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: Retrotransposon protein, putative, unclassified 9.658e-23
Internal
sp_v3.0_unigene187556 SustainPine v3.0 476
AutoFact: putative transcription factor [Cucumis sativus] 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene187668 SustainPine v3.0 151
AutoFact: putative MADS-domain transcription factor DEFH7 [Antirrhinum majus] 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene188459 SustainPine v3.0 325
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 1.0e-26
FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
Sma3: Retrotransposon protein, putative, unclassified 6.859e-23
Internal
sp_v3.0_unigene188606 SustainPine v3.0 614
AutoFact: Mads box protein, putative n=1 Tax=Ricinus communis RepID=B9RX62_RICCO 2.0e-18
FL-Next: tr=Dal1 protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
Internal
sp_v3.0_unigene188653 SustainPine v3.0 620
AutoFact: pfam00046, Homeobox, Homeobox domain 3.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain