Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: sequence-specific DNA binding

Term: GO:0043565  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene159865 SustainPine v3.0 302
• AutoFact: MADS-box transcription factor SrMADS1 (Fragment) n=1 Tax=Selaginella remotifolia RepID=Q84UJ6_SELRE 3.0e-08
• FL-Next: tr=DEF/GLO-like protein; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
N-terminus
sp_v3.0_unigene159955 SustainPine v3.0 443
• AutoFact: Putative MADS domain transcription factor GGM5 (Fragment) n=1 Tax=Gnetum gnemon RepID=Q9XGK2_GNEGN 2.0e-20
• FL-Next: tr=MADS-box protein; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Putative MADS domain transcription factor GGM5 5.848e-06
C-terminus
sp_v3.0_unigene160265 SustainPine v3.0 317
• AutoFact: MADS-box protein AGL2 subfamily n=1 Tax=Coffea arabica RepID=E9JPX4_COFAR 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Leafy hull sterile 1 5.918e-18
Internal
sp_v3.0_unigene160607 SustainPine v3.0 490
• AutoFact: putative MADS box protein [Musa acuminata] 8.0e-13
• FL-Next: tr=Uncharacterized protein; Oryza glaberrima (African rice). 0.0
• Sma3: MADS-box protein 2.683e-22
Complete
sp_v3.0_unigene160899 SustainPine v3.0 373
• AutoFact: Ubiquitin carboxyl-terminal hydrolase 12 n=8 Tax=Brassicaceae RepID=UBP12_ARATH 5.0e-37
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene161218 SustainPine v3.0 372
• AutoFact: nuclear factor Y, subunit C11 [Arabidopsis thaliana] gb|AAL58929.1|AF462841_1 At3g12480/MQC3.32 [Arabidopsis thaliana] dbj|BAB03155.1| unnamed protein product [Arabidopsis thaliana] gb|AAN28786.1| At3g12480/MQC3.32 [Arabidopsis thaliana] gb|AEE75200.1| nu 5.0e-08
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Repressor protein 1.909e-11
N-terminus
sp_v3.0_unigene161500 SustainPine v3.0 398
• AutoFact: Putative MADS domain transcription factor GGM3 n=1 Tax=Gnetum gnemon RepID=Q9XGK4_GNEGN 3.0e-34
• FL-Next: tr=MADS box protein; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: AGAMOUS-like protein 1.643e-33
N-terminus
sp_v3.0_unigene161503 SustainPine v3.0 457
• AutoFact: Class III homeodomain leucine zipper protein n=6 Tax=Spermatophyta RepID=E7DX26_PICGL 3.0e-09
• FL-Next: tr=Class III HD-Zip protein HDZ32; Pinus taeda (Loblolly pine). 0.0
• Sma3: Class III homeodomain-leucine zipper protein C3HDZ2 4.307e-12
Putative C-terminus
sp_v3.0_unigene161533 SustainPine v3.0 355
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 5.0e-29
• FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
• Sma3: Pol protein integrase region 1.429e-35
Internal
sp_v3.0_unigene161931 SustainPine v3.0 309
• AutoFact: Nuclear transcription factor Y subunit C-2 n=2 Tax=Arabidopsis RepID=NFYC2_ARATH 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ccaat-binding transcription factor, putative 2.889e-26
Internal
sp_v3.0_unigene161956 SustainPine v3.0 239
• AutoFact: WRKY-type DNA binding protein n=2 Tax=Solanum tuberosum RepID=Q8H9D7_SOLTU 6.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WRKY transcription factor, putative 2.227e-16
Putative C-terminus
sp_v3.0_unigene162114 SustainPine v3.0 338
• AutoFact: Ser/Thr protein kinase isolog [Arabidopsis thaliana] 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr10 scaffold_81, whole genome shotgun sequence 3.0e-15
Internal
sp_v3.0_unigene162121 SustainPine v3.0 210
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 1.0e-23
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.542e-10
Internal
sp_v3.0_unigene162252 SustainPine v3.0 296
• AutoFact: polyprotein [Glycine max] 1.0e-19
• FL-Next: tr=Disease resistance protein; pekinensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 4.516e-19
Internal
sp_v3.0_unigene162305 SustainPine v3.0 340
• AutoFact: Os07g0510800 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0D652_ORYSJ 8.0e-17
• FL-Next: tr=Retrotransposon protein, putative, unclassified, expressed; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene162611 SustainPine v3.0 387
• AutoFact: rve domain containing protein 9.0e-12
• FL-Next: tr=Putative uncharacterized protein; Lotus japonicus (Lotus corniculatus var. japonicus). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.839e-16
Internal
sp_v3.0_unigene162619 SustainPine v3.0 190
• AutoFact: Transcription factor WRKY-1 n=1 Tax=Coptis japonica var. dissecta RepID=A0ZT25_COPJA 6.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene162621 SustainPine v3.0 290
• AutoFact: Unassigned protein
• FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
C-terminus
sp_v3.0_unigene162626 SustainPine v3.0 379
• AutoFact: WRKY35 transcription factor n=1 Tax=Brassica napus RepID=C4N1L4_BRANA 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WRKY transcription factor, putative 3.235e-20
Putative C-terminus
sp_v3.0_unigene162681 SustainPine v3.0 377
• AutoFact: Unassigned protein 9.99995e-41
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.869e-15
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain