Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: sequence-specific DNA binding

Term: GO:0043565  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene151063 SustainPine v3.0 317
• AutoFact: PREDICTED: nuclear cap-binding protein subunit 2-like n=1 Tax=Meleagris gallopavo RepID=UPI0002035C1F 1.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nuclear cap-binding protein 3.771e-11
Internal
sp_v3.0_unigene151497 SustainPine v3.0 419
• AutoFact: Transcription factor Mbf1, putative n=1 Tax=Ixodes scapularis RepID=B7QF39_IXOSC 3.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Multiprotein bridging factor 9.453e-09
C-terminus
sp_v3.0_unigene152100 SustainPine v3.0 254
• AutoFact: spermatogenesis associated 4 [Ciona intestinalis] gb|AAX93765.1| spermatogenesis associated 4 [Ciona intestinalis] 6.0e-18
• FL-Next: tr=Predicted protein; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
N-terminus
sp_v3.0_unigene152157 SustainPine v3.0 336
• AutoFact: NADH-cytochrome b5 reductase 2 [Xenopus laevis] sp|Q5PQA4.1|NB5R2_XENLA RecName: Full=NADH-cytochrome b5 reductase 2; Short=b5R.2 gb|AAH87294.1| Cyb5r2 protein [Xenopus laevis] 2.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cytochrome b5 reductase 1.901e-11
Internal
sp_v3.0_unigene152384 SustainPine v3.0 414
• AutoFact: Nuclear transcription factor Y subunit B-3 n=2 Tax=Oomycetes RepID=D0NH93_PHYIT 5.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ccaat-binding transcription factor subunit A, putative 6.114e-36
Internal
sp_v3.0_unigene153184 SustainPine v3.0 490
• AutoFact: Multidrug resistance protein 1, 2, 3 (P glycoprotein 1, 2, 3) n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1CVJ9_NEOFI 6.0e-31
• FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
• Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
C-terminus
sp_v3.0_unigene153252 SustainPine v3.0 480
• AutoFact: Multiprotein bridging factor, putative n=2 Tax=Aedes aegypti RepID=Q16XS9_AEDAE 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Multiprotein bridging factor 7.067e-09
Putative Complete
sp_v3.0_unigene154658 SustainPine v3.0 502
• AutoFact: Flap endonuclease 1 n=3 Tax=Clupeocephala RepID=FEN1A_DANRE 0.0
• FL-Next: sp=Flap endonuclease 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Flap endonuclease 1a 6.823e-09
Internal
sp_v3.0_unigene155701 SustainPine v3.0 390
• AutoFact: Endonuclease III homolog n=1 Tax=Schizosaccharomyces pombe 972h- RepID=NTH1_SCHPO 1.0e-36
• FL-Next: tr=Predicted protein; Ostreococcus lucimarinus (strain CCE9901). 0.0
Internal
sp_v3.0_unigene156027 SustainPine v3.0 258
• AutoFact: DNA repair protein RAD51 homolog 1 n=16 Tax=Amniota RepID=RAD51_MOUSE 1.0e-30
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Meiotic recombination protein DMC1 homolog 1.491e-11
Internal
sp_v3.0_unigene156109 SustainPine v3.0 402
• AutoFact: Transcriptional coactivator, multiprotein bridging factor Mbf1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JV65_SCHJY 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene156110 SustainPine v3.0 235
• AutoFact: RAB GTPase-like protein C2B [Arabidopsis thaliana] ref|NP_001189850.1| RAB GTPase-like protein C2B [Arabidopsis thaliana] ref|NP_001189851.1| RAB GTPase-like protein C2B [Arabidopsis thaliana] sp|Q9SF92.1|RAC2B_ARATH RecName: Full=Ras-related protein RABC 9.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab18/RabC-family small GTPase 2.68e-20
Internal
sp_v3.0_unigene156476 SustainPine v3.0 410
• AutoFact: Mini zinc finger 1 n=1 Tax=Welwitschia mirabilis RepID=B0LK08_WELMI 6.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative ZF-HD homeobox protein 9.451e-08
C-terminus
sp_v3.0_unigene157049 SustainPine v3.0 418
• AutoFact: PREDICTED: similar to RAD51 homolog isoform 1 n=1 Tax=Ciona intestinalis RepID=UPI000180BB1E 0.0
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Meiotic recombination protein DMC1 homolog 7.079e-12
Internal
sp_v3.0_unigene157725 SustainPine v3.0 253
• AutoFact: Helix-turn-helix family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CE504 3.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Multiprotein bridging factor 1 6.498e-09
Putative C-terminus
sp_v3.0_unigene157871 SustainPine v3.0 217
• AutoFact: Kinesin motor domain containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI0001509F22 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kinesin-like protein 2.063e-17
Internal
sp_v3.0_unigene158432 SustainPine v3.0 186
• AutoFact: ABC transporter, ATP-binding/permease protein n=3 Tax=Rhodobacteraceae RepID=A9F879_9RHOB 8.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ABC transporter-like protein 1.16e-09
Internal
sp_v3.0_unigene158806 SustainPine v3.0 270
• AutoFact: ABC transporter related protein n=1 Tax=Alicycliphilus denitrificans BC RepID=E8TY52_ALIDB 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MDR-like ABC transporter 9.529e-28
Internal
sp_v3.0_unigene159283 SustainPine v3.0 115
• AutoFact: MADS-box transcription factor FBP4 [Petunia x hybrida] 6.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene159725 SustainPine v3.0 356
• AutoFact: Unassigned protein 3.0e-19
• FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain