Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: sequence-specific DNA binding

Term: GO:0043565  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene35338 SustainPine v3.0 610
• AutoFact: Translin associated factor X, putative n=1 Tax=Ricinus communis RepID=B9RE89_RICCO 5.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene35400 SustainPine v3.0 2006
• AutoFact: Floricaula/leafy-like protein FL1 n=2 Tax=Pinaceae RepID=NEED_PINRA 0.0
• FL-Next: sp=Floricaula/leafy-like protein FL1; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: LFY-like protein OrcLFY 2.064e-29
Complete
sp_v3.0_unigene35670 SustainPine v3.0 1096
• AutoFact: Ccaat-binding transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RHZ1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene36119 SustainPine v3.0 434
• AutoFact: WRKY6 transcription factor (Fragment) n=1 Tax=Triticum aestivum RepID=B3GAV3_WHEAT 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene36207 SustainPine v3.0 1202
• AutoFact: WRKY7-superfamily of TFs having WRKY and zinc finger domains n=1 Tax=Zea mays RepID=B6T167_MAIZE 9.0e-28
• FL-Next: sp=Probable WRKY transcription factor 50; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: WRKY transcription factor, putative 4.421e-18
Complete
sp_v3.0_unigene36445 SustainPine v3.0 980
• AutoFact: Heat stress transcription factor B-4b n=3 Tax=Oryza sativa RepID=HFB4B_ORYSJ 4.99983e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat shock transcription factor 9.994e-10
Internal
sp_v3.0_unigene36472 SustainPine v3.0 736
• AutoFact: Homeobox transcription factor SKN2 n=3 Tax=Pinaceae RepID=Q9ZR90_PICMA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: KNOTTED1 homeodomain protein 1.577e-20
N-terminus
sp_v3.0_unigene36478 SustainPine v3.0 1004
• AutoFact: Homeobox-leucine zipper-like protein n=2 Tax=Picea RepID=Q3HRT1_PICGL 3.0e-24
• FL-Next: tr=Homeobox-leucine zipper-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Putative C-terminus
sp_v3.0_unigene36658 SustainPine v3.0 2116
• AutoFact: GATA transcription factor 12 [Arabidopsis thaliana] sp|P69781.1|GAT12_ARATH RecName: Full=GATA transcription factor 12 dbj|BAH30596.1| hypothetical protein [Arabidopsis thaliana] gb|AED93492.1| GATA transcription factor 12 [Arabidopsis thaliana] 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GATA zinc finger family protein 2.103e-10
Complete
sp_v3.0_unigene36770 SustainPine v3.0 3197
• AutoFact: Homeobox 1 n=1 Tax=Picea abies RepID=Q9FR59_PICAB 0.0
• FL-Next: tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Homeobox 1 0.0
Complete
sp_v3.0_unigene37009 SustainPine v3.0 798
• AutoFact: Putative MADS box transcription factor PrMADS5 n=1 Tax=Pinus radiata RepID=O24489_PINRA 0.0
• FL-Next: tr=Putative MADS box transcription factor PrMADS5; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Putative MADS box transcription factor PrMADS5 0.0
Complete
sp_v3.0_unigene37459 SustainPine v3.0 2884
• AutoFact: Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative n=1 Tax=Ricinus communis RepID=B9RTY0_RICCO 0.0
• FL-Next: sp=Mitogen-activated protein kinase kinase kinase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative 3.023e-13
Complete
sp_v3.0_unigene37537 SustainPine v3.0 726
• AutoFact: Putative NPK1-related protein kinase [Oryza sativa Japonica Group] gb|AAM47615.1|AC122147_4 Putative NPK1-related protein kinase [Oryza sativa Japonica Group] gb|AAP51982.1| Protein kinase domain containing protein [Oryza sativa Japonica Group] gb|EAZ1519 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative 9.518e-07
Internal
sp_v3.0_unigene37667 SustainPine v3.0 785
• AutoFact: repressor protein [Glycine max] gb|ACU13895.1| unknown [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Repressor protein 2.219e-15
Complete
sp_v3.0_unigene37671 SustainPine v3.0 1065
• AutoFact: Putative MADS box transcription factor PrMADS9 n=1 Tax=Pinus radiata RepID=O24487_PINRA 0.0
• FL-Next: tr=Putative MADS box transcription factor PrMADS9; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Putative MADS box transcription factor PrMADS9 0.0
Complete
sp_v3.0_unigene38172 SustainPine v3.0 4174
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 6.04e-08
Complete
sp_v3.0_unigene38724 SustainPine v3.0 2148
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.7e-24
C-terminus
sp_v3.0_unigene38725 SustainPine v3.0 496
• AutoFact: Putative polyprotein n=1 Tax=Solanum lycopersicum RepID=Q5GA69_SOLLC 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.496e-16
Internal
sp_v3.0_unigene38748 SustainPine v3.0 1859
• AutoFact: paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] sp|Q9LFQ3.2|SNL2_ARATH RecName: Full=Paired amphipathic helix protein Sin3-like 2 gb|AED92105.1| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative histone deacetylase complex, SIN3 component 5.589e-16
Putative Complete
sp_v3.0_unigene38784 SustainPine v3.0 679
• AutoFact: NDX1 homeobox protein n=1 Tax=Lotus japonicus RepID=Q9ZRY4_LOTJA 0.0
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain