Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ubiquitin-dependent protein catabolic process

Term: GO:0006511  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene8591 SustainPine v3.0 429
• AutoFact: ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] ref|NP_001031455.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gb|AAD20674.1| hypothetical protein [Arabidopsis thaliana] gb|AAL67006.1| unknown prote 5.0e-17
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene8866 SustainPine v3.0 1937
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Selaginella moellendorffii RepID=D8S7A6_SELML 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 5.181e-24
Complete
sp_v3.0_unigene8875 SustainPine v3.0 1807
• AutoFact: pfam03145, Sina, Seven in absentia protein family 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene8881 SustainPine v3.0 1880
• AutoFact: Ubiquitin carboxyl-terminal hydrolase 12 n=8 Tax=Brassicaceae RepID=UBP12_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 4.139e-09
Complete
sp_v3.0_unigene8883 SustainPine v3.0 2186
• AutoFact: phosphatase SGT1b [Arabidopsis thaliana] sp|Q9SUT5.1|SGT1B_ARATH RecName: Full=Protein SGT1 homolog B; Short=AtSGT1b; AltName: Full=Protein ENHANCED DOWNY MILDEW 1; AltName: Full=Protein ENHANCER OF TIR1-1 AUXIN RESISTANCE 3; AltName: Full=Suppressor of G 0.0
• FL-Next: sp=Protein SGT1 homolog B; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SGT1-like protein 6.915e-26
Complete
sp_v3.0_unigene9244 SustainPine v3.0 1642
• AutoFact: PREDICTED: similar to KAK (KAKTUS) isoform 1 n=2 Tax=Vitis vinifera RepID=UPI0001982DD6 0.0
• FL-Next: sp=E3 ubiquitin-protein ligase UPL3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene9398 SustainPine v3.0 416
• AutoFact: Ubiquitin-protein ligase, UPL5 n=2 Tax=Selaginella moellendorffii RepID=D8SHX3_SELML 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene9597 SustainPine v3.0 3193
• AutoFact: putative ubiquitin-specific protease [Oryza sativa Japonica Group] 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative ubiquitin-specific protease 1.134e-10
Putative Complete
sp_v3.0_unigene9666 SustainPine v3.0 665
• AutoFact: Thioredoxin H-type n=5 Tax=Picea RepID=TRXH_PICMA 1.4013e-45
• FL-Next: sp=Thioredoxin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Thioredoxin h 1.291e-39
Complete
sp_v3.0_unigene9686 SustainPine v3.0 2466
• AutoFact: OSJNBa0058K23.10 protein n=4 Tax=Oryza sativa RepID=Q7XTU2_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kelch motif family protein 9.547e-13
Complete
sp_v3.0_unigene9732 SustainPine v3.0 1374
• AutoFact: amino acid carrier, putative [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Amino acid permease 0.0
C-terminus
sp_v3.0_unigene9806 SustainPine v3.0 1133
• AutoFact: Proline-rich protein n=1 Tax=Pinus taeda RepID=Q9LLZ6_PINTA 1.0e-19
• FL-Next: tr=Proline-rich protein; Pinus taeda (Loblolly pine). 0.0
• Sma3: 36.4 kDa proline-rich protein 2.275e-13
Complete
sp_v3.0_unigene9877 SustainPine v3.0 844
• AutoFact: Extensin_2 multi-domain protein 4.0e-24
• Sma3: Extensin 0.0
coding
sp_v3.0_unigene10061 SustainPine v3.0 1847
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SFU8_PHYPA 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene10101 SustainPine v3.0 2664
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ricinus communis RepID=B9SWA7_RICCO 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 2.634e-26
C-terminus
sp_v3.0_unigene11267 SustainPine v3.0 653
• AutoFact: ubiquitin thiolesterase [Arabidopsis thaliana] gb|AAL06935.1| AT3g58520/F14P22_110 [Arabidopsis thaliana] gb|AAM91040.1| AT3g58520/F14P22_110 [Arabidopsis thaliana] gb|AEE79794.1| ubiquitin thiolesterase [Arabidopsis thaliana] 8.0e-15
• FL-Next: tr=Os04g0546100 protein; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene11434 SustainPine v3.0 2136
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Picea sitchensis RepID=A9NUT3_PICSI 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene11841 SustainPine v3.0 1448
• AutoFact: DUF659 domain containing protein 7.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene12200 SustainPine v3.0 568
• AutoFact: Tetratricopeptide-like helical n=1 Tax=Medicago truncatula RepID=Q1SN04_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 7.888e-11
Internal
sp_v3.0_unigene12265 SustainPine v3.0 2603
• AutoFact: E3 ubiquitin-protein ligase UPL5 [Arabidopsis thaliana] sp|Q9SU29.1|UPL5_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL5; Short=Ubiquitin-protein ligase 5 emb|CAB41727.2| polyubiquitin-like protein [Arabidopsis thaliana] emb|CAB78300.1| polyubiquitin 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: HECT 2.121e-09
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain