Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ubiquitin-dependent protein catabolic process

Term: GO:0006511  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene46214 SustainPine v3.0 591
• AutoFact: ubiquitin-specific protease 23 [Arabidopsis thaliana] 1.0e-38
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 23; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 2.42e-19
Internal
sp_v3.0_unigene46755 SustainPine v3.0 209
• AutoFact: DUF659 domain containing protein 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Chromosome chr9 scaffold_90, whole genome shotgun sequence 6.637e-06
Putative C-terminus
sp_v3.0_unigene46886 SustainPine v3.0 277
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SG48_PHYPA 1.0e-23
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 22; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
sp_v3.0_unigene47110 SustainPine v3.0 149
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Vitis vinifera RepID=A5B4K5_VITVI 2.0e-14
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 23; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 1.416e-16
Internal
sp_v3.0_unigene47566 SustainPine v3.0 288
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SBK1_RICCO 4.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 1.44e-18
Putative N-terminus
sp_v3.0_unigene48519 SustainPine v3.0 171
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative, expressed 4.02e-09
Internal
sp_v3.0_unigene48560 SustainPine v3.0 349
• AutoFact: PREDICTED: similar to KAK (KAKTUS) isoform 1 n=2 Tax=Vitis vinifera RepID=UPI0001982DD6 1.0e-21
• FL-Next: sp=E3 ubiquitin-protein ligase UPL3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48615 SustainPine v3.0 1239
• AutoFact: PREDICTED: similar to KAK (KAKTUS) isoform 1 n=2 Tax=Vitis vinifera RepID=UPI0001982DD6 0.0
• FL-Next: sp=E3 ubiquitin-protein ligase UPL3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene49191 SustainPine v3.0 304
• AutoFact: cullin-like protein [Oryza sativa Japonica Group] gb|AAQ01196.1| CUL1 [Oryza sativa Japonica Group] 5.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene49690 SustainPine v3.0 1252
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ricinus communis RepID=B9RWG7_RICCO 5.0e-37
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene49779 SustainPine v3.0 511
• AutoFact: Pentatricopeptide repeat protein 65 n=2 Tax=Funariaceae RepID=F5CAD8_FUNHY 2.00386e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 1.183e-10
Putative N-terminus
sp_v3.0_unigene49793 SustainPine v3.0 441
• AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7U6B4_VITVI 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene50159 SustainPine v3.0 311
• AutoFact: Drf_FH1 multi-domain protein 6.0e-28
• Sma3: Glycine-rich protein 2.257e-15
coding
sp_v3.0_unigene50691 SustainPine v3.0 208
• AutoFact: cullin 1C [Nicotiana tabacum] 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative cullin 6.495e-08
Internal
sp_v3.0_unigene50792 SustainPine v3.0 980
• AutoFact: Proteasome subunit alpha type n=1 Tax=Ricinus communis RepID=B9T3P0_RICCO 0.0
• FL-Next: sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasome subunit alpha type 1.432e-30
Complete
sp_v3.0_unigene50910 SustainPine v3.0 298
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative, expressed 3.557e-10
Internal
sp_v3.0_unigene51291 SustainPine v3.0 165
• AutoFact: Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NP38_PICSI 6.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasome subunit alpha type 1.269e-33
Internal
sp_v3.0_unigene51444 SustainPine v3.0 709
• AutoFact: Ubiquitin carrier protein n=4 Tax=Viridiplantae RepID=C5X897_SORBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 0.0
Complete
sp_v3.0_unigene51471 SustainPine v3.0 110
• AutoFact: E3 ubiquitin-protein ligase UPL3 [Arabidopsis thaliana] gb|AEE86953.1| E3 ubiquitin-protein ligase UPL3 [Arabidopsis thaliana] 8.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene51478 SustainPine v3.0 422
• AutoFact: cullin 1-like protein C [Petunia integrifolia subsp. inflata] 6.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain