Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: transcription, DNA-dependent

Term: GO:0006351  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1497 SustainPine v3.0 1437
• AutoFact: DNA-directed RNA polymerase IIa [Nicotiana tabacum] gb|AAD34614.1|AF153278_1 DNA-directed RNA polymerase IIb [Nicotiana tabacum] 8.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1925 SustainPine v3.0 1363
• AutoFact: RNA polymerase Rpb6 [Arabidopsis thaliana] gb|AAK44116.1|AF370301_1 putative DNA-directed RNA polymerase II subunit [Arabidopsis thaliana] dbj|BAB11042.1| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis thaliana] gb|AAL34262.1| putative D 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene8197 SustainPine v3.0 2221
• AutoFact: bZIP DNA-binding protein [Petroselinum crispum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor HBP-1a 7.248e-11
Complete
sp_v3.0_unigene11396 SustainPine v3.0 2142
• AutoFact: pfam07777, MFMR, G-box binding protein MFMR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene13516 SustainPine v3.0 2970
• AutoFact: bZIP DNA-binding protein [Petroselinum crispum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor HBP-1a 1.03e-10
Complete
sp_v3.0_unigene16862 SustainPine v3.0 2268
• AutoFact: pfam07777, MFMR, G-box binding protein MFMR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor HBP-1a 4.014e-15
Complete
sp_v3.0_unigene24479 SustainPine v3.0 497
• AutoFact: DNA-directed RNA polymeraseI n=4 Tax=Culicidae RepID=B0XGQ1_CULQU 1.0e-35
• FL-Next: tr=DNAdirected RNA polymerase I putative; Albugo laibachii Nc14. 0.0
Complete
sp_v3.0_unigene27998 SustainPine v3.0 630
• AutoFact: Class III homeodomain leucine zipper protein n=2 Tax=Pinaceae RepID=E7DX27_PICGL 0.0
• FL-Next: tr=Class III homeodomain leucine zipper protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Class III homeodomain-leucine zipper protein C3HDZ1 2.765e-33
N-terminus
sp_v3.0_unigene32188 SustainPine v3.0 958
• AutoFact: DNA-directed RNA polymerase, 14 to 18 kDa subunit [Medicago truncatula] 2.94273e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene59151 SustainPine v3.0 450
• AutoFact: Homeobox domain containing protein 5.0e-09
• FL-Next: tr=Class III homeodomain-leucine zipper protein C3HDZ1; Taxus globosa. 0.0
• Sma3: Class III homeodomain-leucine zipper protein C3HDZ1 2.864e-33
Internal
sp_v3.0_unigene62073 SustainPine v3.0 165
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Pinus koraiensis RepID=A4QM13_PINKO 1.0e-05
• FL-Next: sp=DNA-directed RNA polymerase; Pinus koraiensis (Korean pine). Plastid; Chloroplast. 0.0
N-terminus
sp_v3.0_unigene120057 SustainPine v3.0 439
• AutoFact: DNA-directed RNA polymerase subunit beta' n=71 Tax=Propionibacterium RepID=RPOC_PROAC 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Halocarpus kirkii. Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase subunit beta'' 0.0
Internal
sp_v3.0_unigene140731 SustainPine v3.0 558
• AutoFact: DNA-directed RNA polymerase IIa [Nicotiana tabacum] gb|AAD34614.1|AF153278_1 DNA-directed RNA polymerase IIb [Nicotiana tabacum] 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene153956 SustainPine v3.0 434
• AutoFact: DNA-directed RNA polymerase subunit beta n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE1_HALO1 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Cephalotaxus wilsoniana. Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase subunit beta 0.0
Internal
sp_v3.0_unigene154287 SustainPine v3.0 436
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 3.21e-32
Complete
sp_v3.0_unigene158048 SustainPine v3.0 435
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Thauera sp. MZ1T RepID=C4KC58_THASP 1.4013e-45
• FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Pinus brutia. Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase subunit beta'' 0.0
Putative C-terminus
sp_v3.0_unigene158954 SustainPine v3.0 237
• AutoFact: DNA-directed RNA polymerase IIa [Nicotiana tabacum] gb|AAD34614.1|AF153278_1 DNA-directed RNA polymerase IIb [Nicotiana tabacum] 7.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative DNA-directed RNA polymerase Iia 1.251e-08
C-terminus
sp_v3.0_unigene159192 SustainPine v3.0 175
• AutoFact: DNA-directed RNA polymerase subunit beta' n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUG7_CHIPD 6.0e-24
• FL-Next: sp=DNA-directed RNA polymerase; Abies firma (Momi fir). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase subunit beta' 0.0
Internal
sp_v3.0_unigene165588 SustainPine v3.0 482
• AutoFact: DNA-directed RNA polymerases I n=2 Tax=Pyrenophora RepID=B2WBI5_PYRTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative DNA-directed RNA polymerase II subunit 1.013e-08
C-terminus
sp_v3.0_unigene192992 SustainPine v3.0 433
• AutoFact: DNA-directed RNA polymerase subunit beta n=1 Tax=Conexibacter woesei DSM 14684 RepID=D3FET2_CONWI 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Larix decidua (European larch). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase subunit beta 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain