Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA processing

Term: GO:0006364  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene394 SustainPine v3.0 2851
AutoFact: oligopeptide transporter OPT family protein [Musa acuminata] 0.0
FL-Next: sp=Oligopeptide transporter 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Oligopeptide transporter OPT family 1.292e-30
Complete
sp_v3.0_unigene403 SustainPine v3.0 1855
AutoFact: DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 4.649e-12
Putative Complete
sp_v3.0_unigene923 SustainPine v3.0 1604
AutoFact: radical SAM domain-containing protein [Arabidopsis thaliana] gb|AAL06909.1| At2g39670/F17A14.4 [Arabidopsis thaliana] gb|AAL32891.1| Unknown protein [Arabidopsis thaliana] gb|AAB97122.2| expressed protein [Arabidopsis thaliana] gb|AAN15379.1| Unknown prot 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr13 scaffold_17, whole genome shotgun sequence 0.0
Putative Complete
sp_v3.0_unigene1364 SustainPine v3.0 3881
AutoFact: U3 small nucleolar RNA-associated protein, putative n=1 Tax=Ricinus communis RepID=B9S245_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene1914 SustainPine v3.0 2363
AutoFact: Ribonuclease II/R family protein [Arabidopsis thaliana] gb|AAQ62877.1| At5g02250 [Arabidopsis thaliana] dbj|BAD44146.1| ribonuclease II-like protein [Arabidopsis thaliana] gb|AED90450.1| Ribonuclease II/R family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Ribonuclease II-like protein 1.746e-09
C-terminus
sp_v3.0_unigene1922 SustainPine v3.0 1402
AutoFact: ribosomal RNA small subunit methyltransferase E [Arabidopsis thaliana] gb|AAT68325.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gb|AAV63853.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gb|AEE32505.1| ribosomal RNA small subunit met 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene2027 SustainPine v3.0 3915
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S0D0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene2239 SustainPine v3.0 1494
AutoFact: ribonuclease P-like protein [Arabidopsis thaliana] gb|AAC64308.2| expressed protein [Arabidopsis thaliana] gb|AAM63258.1| unknown [Arabidopsis thaliana] gb|AEC10224.1| ribonuclease P-like protein [Arabidopsis thaliana] 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2391 SustainPine v3.0 2584
AutoFact: DEAD box protein P68 [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 7.893e-21
Complete
sp_v3.0_unigene2579 SustainPine v3.0 2564
AutoFact: U3 small nucleolar ribonucleoprotein protein mpp10, putative n=1 Tax=Ricinus communis RepID=B9RB06_RICCO 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Complete
sp_v3.0_unigene2763 SustainPine v3.0 2135
AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 5.401e-22
C-terminus
sp_v3.0_unigene2826 SustainPine v3.0 2704
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 53; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 7 1.011e-10
Complete
sp_v3.0_unigene3095 SustainPine v3.0 2640
AutoFact: Oligopeptide transporter 9 n=2 Tax=Zea mays RepID=B6SVF4_MAIZE 0.0
FL-Next: tr=Uncharacterized protein; Oryza glaberrima (African rice). 0.0
Sma3: Oligopeptide transporter OPT family 1.372e-30
Complete
sp_v3.0_unigene3122 SustainPine v3.0 2589
AutoFact: Carbohydrate kinase, PfkB [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene3561 SustainPine v3.0 1818
AutoFact: U3 ribonucleoprotein-like protein [Arabidopsis thaliana] gb|AEE82164.1| U3 ribonucleoprotein-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene3673 SustainPine v3.0 1889
AutoFact: H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana] sp|Q9LD90.1|DKC1_ARATH RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName: Full=Nopp-140-associated protein of 57 kDa homolog; Short=AtNAP57; AltName: Full=Nucleolar protein NA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Centromere/microtubule binding protein cbf5, putative 4.506e-08
Complete
sp_v3.0_unigene4190 SustainPine v3.0 1442
AutoFact: Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene4245 SustainPine v3.0 3060
AutoFact: Oligopeptide transporter OPT family n=2 Tax=Populus trichocarpa RepID=B9HN76_POPTR 0.0
FL-Next: sp=Oligopeptide transporter 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Oligopeptide transporter OPT family 1.4e-30
Complete
sp_v3.0_unigene4278 SustainPine v3.0 616
AutoFact: Helicase, C-terminal [Medicago truncatula] 7.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 30 6.509e-08
Putative C-terminus
sp_v3.0_unigene4748 SustainPine v3.0 715
AutoFact: Os08g0155000 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q6ZJR7_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U3 small nucleolar ribonucleoprotein protein imp4, putative 3.745e-09
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain