Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA processing

Term: GO:0006364  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene144318 SustainPine v3.0 509
• AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T842_RICCO 3.0e-40
• FL-Next: tr=Putative uncharacterized protein Sb10g025320; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
C-terminus
sp_v3.0_unigene148441 SustainPine v3.0 150
• AutoFact: Unassigned protein
• FL-Next: tr=Uncharacterized protein; Lotus japonicus (Lotus corniculatus var. japonicus). 0.0
Putative N-terminus
sp_v3.0_unigene149755 SustainPine v3.0 174
• AutoFact: ATP-dependent RNA helicase eIF4A n=2 Tax=Ustilaginaceae RepID=IF4A_USTMA 3.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 2 2.486e-08
Internal
sp_v3.0_unigene149800 SustainPine v3.0 362
• AutoFact: RNA helicase, DRH1 [Arabidopsis thaliana] 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 14 4.022e-08
Putative C-terminus
sp_v3.0_unigene150294 SustainPine v3.0 174
• AutoFact: rRNA 2'Omethyltransferase fibrillarin putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WG01_9STRA 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin 1.905e-08
Putative C-terminus
sp_v3.0_unigene150391 SustainPine v3.0 357
• AutoFact: PREDICTED: similar to Eukaryotic initiation factor 4A-II n=1 Tax=Hydra magnipapillata RepID=UPI0001925CB9 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.384e-09
C-terminus
sp_v3.0_unigene150615 SustainPine v3.0 336
• AutoFact: PREDICTED: rRNA 2''-O-methyltransferase fibrillarin-like n=1 Tax=Monodelphis domestica RepID=UPI0000F2D171 7.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin 2.95e-08
C-terminus
sp_v3.0_unigene150641 SustainPine v3.0 319
• AutoFact: Ribosome biogenesis protein bop1 n=2 Tax=Danio rerio RepID=BOP1_DANRE 5.99756e-43
• FL-Next: sp=Ribosome biogenesis protein BOP1 homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
• Sma3: Putative WD-40 repeat protein 7.233e-07
Internal
sp_v3.0_unigene150884 SustainPine v3.0 425
• AutoFact: rRNA 2'Omethyltransferase fibrillarin putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WG01_9STRA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin, putative 1.295e-08
C-terminus
sp_v3.0_unigene150944 SustainPine v3.0 438
• AutoFact: PREDICTED: similar to Eukaryotic initiation factor 4A-II n=1 Tax=Hydra magnipapillata RepID=UPI0001925CB9 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 4.553e-14
C-terminus
sp_v3.0_unigene151274 SustainPine v3.0 438
• AutoFact: H/ACA ribonucleoprotein complex subunit 3 n=2 Tax=Sclerotiniaceae RepID=A6S533_BOTFB 4.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 3-like protein 7.581e-09
Complete
sp_v3.0_unigene151917 SustainPine v3.0 485
• AutoFact: DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MT79_PHYIT 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 5.252e-14
C-terminus
sp_v3.0_unigene152234 SustainPine v3.0 362
• AutoFact: putative Glycine-rich protein 2 [Oryza sativa Japonica Group] dbj|BAD07599.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group] gb|EAZ21537.1| hypothetical protein OsJ_05164 [Oryza sativa Japonica Group] gb|ACD13288.1| cold shock domain protei 1.0e-17
• FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Cold-shock protein with RNA binding domain 4.714e-08
Putative N-terminus
sp_v3.0_unigene152902 SustainPine v3.0 448
• AutoFact: Nucleolar protein, component of C/D snoRNPs n=2 Tax=Chlamydomonadales RepID=A8IA86_CHLRE 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin, putative 1.134e-08
C-terminus
sp_v3.0_unigene154054 SustainPine v3.0 411
• AutoFact: H/ACA ribonucleoprotein complex subunit 4 [Bos taurus] gb|AAI34582.1| DKC1 protein [Bos taurus] gb|DAA13229.1| dyskerin [Bos taurus] 8.00141e-43
• FL-Next: sp=H/ACA ribonucleoprotein complex subunit 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Centromere/microtubule binding protein cbf5, putative 3.187e-08
Internal
sp_v3.0_unigene154254 SustainPine v3.0 281
• AutoFact: DEAD/DEAH box helicase domain protein n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FH88_FLAJ1 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 6.818e-11
Internal
sp_v3.0_unigene154437 SustainPine v3.0 508
• AutoFact: DEAD box ATP-dependent RNA helicase n=1 Tax=Culex quinquefasciatus RepID=B0XJH6_CULQU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.058e-11
C-terminus
sp_v3.0_unigene155574 SustainPine v3.0 341
• AutoFact: PREDICTED: eukaryotic translation initiation factor 4A-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBC21A 9.80909e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.736e-11
C-terminus
sp_v3.0_unigene155802 SustainPine v3.0 456
• AutoFact: ATP-dependent RNA helicase DBP3 n=1 Tax=Gibberella zeae PH-1 RepID=DBP3_GIBZE 3.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 5 2.364e-08
C-terminus
sp_v3.0_unigene156104 SustainPine v3.0 604
• AutoFact: ATP-dependent RNA helicase eIF4A n=2 Tax=Ustilaginaceae RepID=IF4A_USTMA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 2.316e-09
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain