Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA processing

Term: GO:0006364  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene72136 SustainPine v3.0 391
• AutoFact: ribosomal RNA small subunit methyltransferase E [Arabidopsis thaliana] gb|AAT68325.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gb|AAV63853.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gb|AEE32505.1| ribosomal RNA small subunit met 7.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene72258 SustainPine v3.0 209
• AutoFact: centromere/microtubule binding protein cbf5 [Cryptococcus neoformans var. neoformans JEC21] ref|XP_775935.1| hypothetical protein CNBD3420 [Cryptococcus neoformans var. neoformans B-3501A] gb|EAL21288.1| hypothetical protein CNBD3420 [Cryptococcus neoform 4.0e-09
• FL-Next: sp=H/ACA ribonucleoprotein complex subunit 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene72543 SustainPine v3.0 222
• AutoFact: Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene73002 SustainPine v3.0 220
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AEE82445.1| transducin/WD40 domain-cont 3.0e-17
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene73496 SustainPine v3.0 229
• AutoFact: ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130] gb|EAU80684.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130] 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.681e-09
C-terminus
sp_v3.0_unigene73635 SustainPine v3.0 522
• AutoFact: Eukaryotic initiation factor 4A n=16 Tax=Schizophora RepID=IF4A_DROME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 34 8.394e-08
Internal
sp_v3.0_unigene73917 SustainPine v3.0 290
• AutoFact: Small nucleolar RNP protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NGL5_COPC7 1.0e-22
• FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 6.913e-09
N-terminus
sp_v3.0_unigene74760 SustainPine v3.0 326
• AutoFact: Helicase, C-terminal [Medicago truncatula] 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 2.032e-08
C-terminus
sp_v3.0_unigene76764 SustainPine v3.0 279
• AutoFact: Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Gibberella zeae PH-1 RepID=PRP5_GIBZE 3.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 2.754e-12
Internal
sp_v3.0_unigene76831 SustainPine v3.0 301
• AutoFact: RNA helicase (Dbp), putative n=2 Tax=Trichocomaceae RepID=B6QP35_PENMQ 7.00649e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 2.563e-08
Internal
sp_v3.0_unigene78576 SustainPine v3.0 279
• AutoFact: RecName: Full=ATP-dependent RNA helicase DBP2 3.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 2.004e-08
Internal
sp_v3.0_unigene79376 SustainPine v3.0 156
• AutoFact: ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130] gb|EAU80684.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130] 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene79539 SustainPine v3.0 251
• AutoFact: Apo-Eif4aiii n=2 Tax=Aureococcus anophagefferens RepID=F0Y6T8_9STRA 8.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 2 1.869e-08
C-terminus
sp_v3.0_unigene79824 SustainPine v3.0 150
• AutoFact: NAD dependent epimerase/dehydratase, putative 6.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene80732 SustainPine v3.0 394
• AutoFact: ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130] gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 9.996e-12
Internal
sp_v3.0_unigene80777 SustainPine v3.0 216
• AutoFact: Succinic semialdehyde reductase isofom1 n=1 Tax=Solanum lycopersicum RepID=B1Q3F6_SOLLC 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 3-hydroxyisobutyrate dehydrogenase, putative 2.944e-07
Internal
sp_v3.0_unigene81227 SustainPine v3.0 242
• AutoFact: ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130] gb|EAU89171.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 6 9.382e-08
Putative C-terminus
sp_v3.0_unigene84077 SustainPine v3.0 284
• AutoFact: DUF3729 multi-domain protein 1.0e-08
coding
sp_v3.0_unigene85882 SustainPine v3.0 350
• AutoFact: TT_ORF1 multi-domain protein 3.0e-09
coding
sp_v3.0_unigene86739 SustainPine v3.0 224
• AutoFact: Tymo_45kd_70kd multi-domain protein 1.0e-05
coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain