Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: rRNA processing

Term: GO:0006364  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene183676 SustainPine v3.0 767
• AutoFact: WD-repeat protein, putative 1.00053e-42
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene184477 SustainPine v3.0 473
• AutoFact: dead-box helicase [Platanus x acerifolia] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.77e-21
Putative C-terminus
sp_v3.0_unigene190581 SustainPine v3.0 331
• AutoFact: PREDICTED: similar to block of proliferation 1 n=1 Tax=Hydra magnipapillata RepID=UPI0001926A5E 9.0e-37
• FL-Next: sp=Ribosome biogenesis protein BOP1 homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
• Sma3: Putative WD-40 repeat protein 5.991e-07
Internal
sp_v3.0_unigene190639 SustainPine v3.0 365
• AutoFact: Eukaryotic initiation factor 4A-III n=1 Tax=Caligus clemensi RepID=C1C237_9MAXI 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 9.226e-09
N-terminus
sp_v3.0_unigene191014 SustainPine v3.0 400
• AutoFact: tobacco fibrillarin homolog [Nicotiana tabacum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin, putative 1.165e-08
Internal
sp_v3.0_unigene191246 SustainPine v3.0 483
• AutoFact: Eukaryotic initiation factor 4A-III, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N6A8_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 3.282e-09
C-terminus
sp_v3.0_unigene191383 SustainPine v3.0 534
• AutoFact: Probable eukaryotic initiation factor 4A n=5 Tax=Trypanosoma RepID=IF4A_TRYBB 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 2 4.041e-08
C-terminus
sp_v3.0_unigene192582 SustainPine v3.0 493
• AutoFact: PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis mellifera] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 2.805e-09
Internal
sp_v3.0_unigene193385 SustainPine v3.0 394
• AutoFact: PREDICTED: fibrillarin-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CB94CA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin, putative 1.103e-08
C-terminus
sp_v3.0_unigene193645 SustainPine v3.0 405
• AutoFact: rRNA 2'-O-methyltransferase fibrillarin n=6 Tax=Tetrapoda RepID=FBRL_XENLA 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin, putative 1.134e-08
C-terminus
sp_v3.0_unigene194514 SustainPine v3.0 237
• AutoFact: ribosomal RNA small subunit methyltransferase E [Arabidopsis thaliana] gb|AAT68325.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gb|AAV63853.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gb|AEE32505.1| ribosomal RNA small subunit met 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene199678 SustainPine v3.0 412
• AutoFact: U3 snoRNP protein [Dictyostelium discoideum AX4] gb|EAL67771.1| U3 snoRNP protein [Dictyostelium discoideum AX4] 9.0e-13
• FL-Next: tr=Putative uncharacterized protein; (Phytophthora megasperma f. sp. glycines). 0.0
Internal
sp_v3.0_unigene199732 SustainPine v3.0 467
• AutoFact: fibrillarin [Xenopus (Silurana) tropicalis] gb|AAH62511.1| fibrillarin [Xenopus (Silurana) tropicalis] emb|CAJ81878.1| fibrillarin [Xenopus (Silurana) tropicalis] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin, putative 1.273e-08
C-terminus
sp_v3.0_unigene203419 SustainPine v3.0 332
• AutoFact: Unassigned protein 6.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene207787 SustainPine v3.0 549
• AutoFact: Putative DEAD-box protein abstrakt n=1 Tax=Trifolium pratense RepID=Q2PEY4_TRIPR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 9.916e-12
Internal
sp_v3.0_unigene207976 SustainPine v3.0 301
• AutoFact: Nucleolar RNA-binding Nop10p-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6K950_ORYSJ 6.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 3-like protein 7.315e-09
Complete
sp_v3.0_unigene208960 SustainPine v3.0 763
• AutoFact: cold-related protein Cor413 [Gossypium barbadense] gb|ABI97481.1| COR413-like protein [Gossypium barbadense] 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cold acclimation protein WCOR413-like protein 4.994e-17
Putative Complete
sp_v3.0_unigene210080 SustainPine v3.0 421
• AutoFact: gamma-tubulin complex component 4-like protein [Arabidopsis thaliana] sp|Q9M350.2|GCP4_ARATH RecName: Full=Gamma-tubulin complex component 4 homolog gb|AAS76714.1| At3g53760 [Arabidopsis thaliana] gb|AAS92328.1| At3g53760 [Arabidopsis thaliana] gb|AEE7913 9.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gamma-tubulin complex component 4 homolog 9.277e-10
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain