Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA-directed RNA polymerase activity

Term: GO:0003899  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene139 SustainPine v3.0 5175
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 0.0
• FL-Next: sp=DNA-directed RNA polymerase; Pseudotsuga menziesii var. menziesii. Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 4.286e-38
Complete
sp_v3.0_unigene983 SustainPine v3.0 3457
• AutoFact: Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9R8W9_RICCO 0.0
• FL-Next: sp=Histone-lysine N-methyltransferase ATX2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SET domain protein 1.535e-15
Putative Complete
sp_v3.0_unigene1025 SustainPine v3.0 1716
• AutoFact: DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative n=1 Tax=Ricinus communis RepID=B9S9D8_RICCO 7.0e-38
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Complete
sp_v3.0_unigene1283 SustainPine v3.0 3015
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TA90_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 2.436e-26
Complete
sp_v3.0_unigene1497 SustainPine v3.0 1437
• AutoFact: DNA-directed RNA polymerase IIa [Nicotiana tabacum] gb|AAD34614.1|AF153278_1 DNA-directed RNA polymerase IIb [Nicotiana tabacum] 8.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1535 SustainPine v3.0 4578
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SV38_VITVI 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Complete
sp_v3.0_unigene1689 SustainPine v3.0 900
• AutoFact: DNA-directed RNA polymerase II subunit J n=4 Tax=Poaceae RepID=B4FJS1_MAIZE 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1925 SustainPine v3.0 1363
• AutoFact: RNA polymerase Rpb6 [Arabidopsis thaliana] gb|AAK44116.1|AF370301_1 putative DNA-directed RNA polymerase II subunit [Arabidopsis thaliana] dbj|BAB11042.1| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis thaliana] gb|AAL34262.1| putative D 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1927 SustainPine v3.0 1075
• AutoFact: 15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH 1.4013e-45
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1928 SustainPine v3.0 1002
• AutoFact: 15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH 0.0
• FL-Next: tr=RPB15.9; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Complete
sp_v3.0_unigene2751 SustainPine v3.0 1434
• AutoFact: Trithorax, putative n=1 Tax=Ricinus communis RepID=B9RII0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Trithorax, putative 2.532e-08
Putative Complete
sp_v3.0_unigene2815 SustainPine v3.0 6319
• AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Complete
sp_v3.0_unigene2956 SustainPine v3.0 1564
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8SDS6_SELML 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.541e-08
Internal
sp_v3.0_unigene3138 SustainPine v3.0 1188
• AutoFact: DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene3210 SustainPine v3.0 1218
• AutoFact: RNA polymerase III subunit RPC82 family protein [Arabidopsis thaliana] gb|AAM20485.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana] gb|AAQ56824.1| At3g49000 [Arabidopsis thaliana] gb|AEE78481.1| RNA polymerase III subunit RPC82 family pro 9.0e-35
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Putative C-terminus
sp_v3.0_unigene4360 SustainPine v3.0 268
• AutoFact: RNA polymerase, dimerisation [Medicago truncatula] 5.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase II, third largest subunit 3.741e-09
Internal
sp_v3.0_unigene6490 SustainPine v3.0 1709
• AutoFact: RNA polymerase I subunit 43 [Arabidopsis thaliana] gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana] gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana] gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed 2.096e-08
Complete
sp_v3.0_unigene7430 SustainPine v3.0 1183
• AutoFact: RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana] gb|AAN13199.1| putative RNA polymerase [Ara 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Complete
sp_v3.0_unigene7641 SustainPine v3.0 2381
• AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative receptor-type protein kinase LRK1 2.552e-26
C-terminus
sp_v3.0_unigene7789 SustainPine v3.0 1230
• AutoFact: Trithorax, putative n=1 Tax=Ricinus communis RepID=B9RII0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SET domain protein 1.305e-12
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain