Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1 SustainPine v3.0 4527
AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene16 SustainPine v3.0 3247
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Glycine-rich protein 1.501e-14
Complete
sp_v3.0_unigene56 SustainPine v3.0 2179
AutoFact: Gag/pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9C5V1_ARATH 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.569e-23
C-terminus
sp_v3.0_unigene59 SustainPine v3.0 2834
AutoFact: rve domain containing protein 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene70 SustainPine v3.0 3486
AutoFact: pfam02364, Glucan_synthase, 1,3-beta-glucan synthase component 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 1,3-beta-glucan synthase 2.792e-37
Complete
sp_v3.0_unigene71 SustainPine v3.0 2227
AutoFact: callose synthase 1 [Arabidopsis thaliana] sp|Q9AUE0.2|CALS1_ARATH RecName: Full=Callose synthase 1; AltName: Full=1,3-beta-glucan synthase; AltName: Full=Protein GLUCAN SYNTHASE-LIKE 6 gb|AEE27855.1| callose synthase 1 [Arabidopsis thaliana] 0.0
FL-Next: sp=Callose synthase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: 1,3-beta-glucan synthase 1.269e-27
Internal
sp_v3.0_unigene90 SustainPine v3.0 923
AutoFact: T31J12.4 n=1 Tax=Arabidopsis thaliana RepID=Q9ZPZ3_ARATH 5.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene93 SustainPine v3.0 3767
AutoFact: protein defective in meristem silencing 3 [Arabidopsis thaliana] gb|AAK83630.1| AT3g49250/F2K15_110 [Arabidopsis thaliana] gb|AAL90947.1| AT3g49250/F2K15_110 [Arabidopsis thaliana] gb|AEE78515.1| protein defective in meristem silencing 3 [Arabidopsis thal 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene108 SustainPine v3.0 3024
AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative ATP-dependent RNA helicase 1.657e-06
Putative Complete
sp_v3.0_unigene121 SustainPine v3.0 2431
AutoFact: mate efflux domain-containing protein [Arabidopsis thaliana] dbj|BAB10542.1| unnamed protein product [Arabidopsis thaliana] gb|AAK76728.1| unknown protein [Arabidopsis thaliana] gb|AAL85047.1| unknown protein [Arabidopsis thaliana] gb|AED96215.1| mate eff 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: TRANSPARENT TESTA 12 protein, putative 1.161e-36
Complete
sp_v3.0_unigene140 SustainPine v3.0 5846
AutoFact: PREDICTED: similar to EBS1 (EMS-MUTAGENIZED BRI1 SUPPRESSOR 1); UDP-glucose:glycoprotein glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups n=1 Tax=Vitis vinifera RepID=UPI00019846EA 0.0
FL-Next: Isoform 2 of UDP-glucose:glycoprotein glucosyltransferase OS=Arabidopsis thaliana GN=UGGT 0.0
Sma3: Glycosyltransferase family 24 protein 1.501e-09
Complete
sp_v3.0_unigene187 SustainPine v3.0 1196
AutoFact: oligoribonuclease [Arabidopsis thaliana] dbj|BAH19818.1| AT2G26970 [Arabidopsis thaliana] gb|AEC07913.1| oligoribonuclease [Arabidopsis thaliana] 0.0
FL-Next: sp=Oligoribonuclease; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Oligoribonuclease 2.166e-09
Complete
sp_v3.0_unigene195 SustainPine v3.0 3806
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 8.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene199 SustainPine v3.0 2299
AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 6.971e-34
Complete
sp_v3.0_unigene208 SustainPine v3.0 3487
AutoFact: DUF1981 domain containing protein 1.0e-29
FL-Next: sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative guanine nucleotide-exchange protein GEP2 1.232e-12
C-terminus
sp_v3.0_unigene241 SustainPine v3.0 1733
AutoFact: pre-mRNA processing factor [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mrna splicing factor 4.959e-09
N-terminus
sp_v3.0_unigene244 SustainPine v3.0 2841
AutoFact: DNA mismatch repair protein MLH1 [Arabidopsis thaliana] emb|CAA10163.1| MLH1 protein [Arabidopsis thaliana] emb|CAB78038.1| MLH1 protein [Arabidopsis thaliana] gb|AEE82726.1| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Complete
sp_v3.0_unigene258 SustainPine v3.0 3223
AutoFact: dynamin-related protein 3A [Arabidopsis thaliana] sp|Q8S944.2|DRP3A_ARATH RecName: Full=Dynamin-related protein 3A; AltName: Full=Dynamin-like protein 2; AltName: Full=Dynamin-like protein 2a emb|CAA20578.1| Arabidopsis dynamin-like protein ADL2 [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dynamin, putative 2.852e-10
Complete
sp_v3.0_unigene315 SustainPine v3.0 2996
AutoFact: DUF1981 domain containing protein 7.0e-32
FL-Next: sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative guanine nucleotide-exchange protein GEP2 1.103e-12
C-terminus
sp_v3.0_unigene320 SustainPine v3.0 2420
AutoFact: Wax2_C multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_268, whole genome shotgun sequence 6.541e-20
Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain