Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1259 SustainPine v3.0 3377
AutoFact: polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB87625.1| polynucleotide phosphorylase [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene1277 SustainPine v3.0 1690
AutoFact: putative tryptophanyl-tRNA synthetase [Oryza sativa Japonica Group] gb|EAY75781.1| hypothetical protein OsI_03697 [Oryza sativa Indica Group] gb|EAZ13498.1| hypothetical protein OsJ_03415 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Complete
sp_v3.0_unigene1283 SustainPine v3.0 3015
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TA90_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 2.436e-26
Complete
sp_v3.0_unigene1315 SustainPine v3.0 2142
AutoFact: [R] COG5415 Predicted integral membrane metal-binding protein 4.0e-05
FL-Next: sp=Uncharacterized protein At2g24330; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene1326 SustainPine v3.0 3646
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 0.0
FL-Next: sp=KH domain-containing protein At1g09660; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene1338 SustainPine v3.0 2267
AutoFact: golgin candidate 1 [Arabidopsis thaliana] sp|Q8S8N9.2|GOGC1_ARATH RecName: Full=Golgin candidate 1; Short=AtGC1; AltName: Full=Golgin-84 gb|AAS49041.1| At2g19950 [Arabidopsis thaliana] dbj|BAF01318.1| hypothetical protein [Arabidopsis thaliana] gb|AEC0694 0.0
FL-Next: sp=Golgin-84; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Golgin-84 5.819e-10
C-terminus
sp_v3.0_unigene1343 SustainPine v3.0 1457
AutoFact: mitochondrial RNA editing factor 1 [Arabidopsis thaliana] sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g52630 dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana] gb|AED96243.1| mitochondria 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Tetratricopeptide-like helical 7.8e-12
Putative Complete
sp_v3.0_unigene1346 SustainPine v3.0 2998
AutoFact: putative protein kinase [Arabidopsis thaliana] gb|AAC04483.1| putative protein kinase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Kinase, putative 1.402e-25
Complete
sp_v3.0_unigene1371 SustainPine v3.0 1191
AutoFact: DUF810 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene1422 SustainPine v3.0 2739
AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1431 SustainPine v3.0 7160
AutoFact: gag-pol polyprotein [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative gag-pol polyprotein 2.535e-09
Complete
sp_v3.0_unigene1441 SustainPine v3.0 1825
AutoFact: Med27 domain containing protein 0.0001
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 27; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative Complete
sp_v3.0_unigene1442 SustainPine v3.0 1146
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
C-terminus
sp_v3.0_unigene1484 SustainPine v3.0 3200
AutoFact: putative poly(A) polymerase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative polynucleotide adenylyltransferase 1.803e-11
Putative Complete
sp_v3.0_unigene1501 SustainPine v3.0 904
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-31
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Cold-shock protein with RNA binding domain 4.18e-08
Putative Complete
sp_v3.0_unigene1503 SustainPine v3.0 1488
AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 0.0
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
C-terminus
sp_v3.0_unigene1554 SustainPine v3.0 1048
AutoFact: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9RQX7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: Myosin XI, putative 8.464e-23
Internal
sp_v3.0_unigene1556 SustainPine v3.0 2117
AutoFact: Zinc finger CCCH domain-containing protein 18 n=4 Tax=Oryza sativa RepID=C3H18_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene1627 SustainPine v3.0 3576
AutoFact: protein kinase-like protein [Arabidopsis thaliana] gb|AAF05853.1|AC011698_4 putative casein kinase [Arabidopsis thaliana] gb|AEE74014.1| protein kinase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Casein kinase, putative 1.165e-15
Complete
sp_v3.0_unigene1659 SustainPine v3.0 1661
AutoFact: histone deacetylase 14 [Arabidopsis thaliana] sp|Q941D6.1|HDA14_ARATH RecName: Full=Histone deacetylase 14 gb|AAK97704.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gb|AAM47377.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gb|AEE86231.1| histone deacetyla 0.0
FL-Next: sp=Histone deacetylase 14; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 2.116e-22
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain