Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene205785 SustainPine v3.0 587
AutoFact: ATP-binding cassette transporter, subfamily B, member 11, group MDR/PGP protein PpABCB11 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U052_PHYPA 8.0e-39
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
C-terminus
sp_v3.0_unigene205921 SustainPine v3.0 532
AutoFact: DUF659 domain containing protein 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Transposase-like protein 3.668e-06
Internal
sp_v3.0_unigene206076 SustainPine v3.0 230
AutoFact: DUF659 domain containing protein 7.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene206191 SustainPine v3.0 499
AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: HAT family dimerisation domain containing protein 1.726e-13
Internal
sp_v3.0_unigene206232 SustainPine v3.0 399
AutoFact: ATP-binding cassette transporter, subfamily B, member 12, group MDR/PGP protein PpABCB12 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TVR7_PHYPA 7.0e-18
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
Putative C-terminus
sp_v3.0_unigene206307 SustainPine v3.0 896
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 3.0e-39
FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
Sma3: Ribosomal protein S3 0.0
C-terminus
sp_v3.0_unigene206457 SustainPine v3.0 369
AutoFact: ABC transporter-like protein (Fragment) n=2 Tax=Picea sitchensis RepID=E0ZDW2_PICSI 3.0e-31
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
C-terminus
sp_v3.0_unigene206487 SustainPine v3.0 542
AutoFact: Ribosomal protein S18 n=4 Tax=Arachnida RepID=A6N9R2_ORNPR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene206562 SustainPine v3.0 732
AutoFact: 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_192718.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_564434.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|XP_002872461.1| hypothetical protein ARALYDRAFT_489832 [Arabidopsis ly 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 8.581e-12
Complete
sp_v3.0_unigene206601 SustainPine v3.0 695
AutoFact: 30S ribosomal protein S13 [Arabidopsis thaliana] sp|P42732.1|RR13_ARATH RecName: Full=30S ribosomal protein S13, chloroplastic; AltName: Full=CS13; Flags: Precursor emb|CAA79013.1| chloroplast 30S ribosomal protein S13 [Arabidopsis thaliana] emb|CAA88028. 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein S13, chloroplast 5.237e-09
Putative Complete
sp_v3.0_unigene206628 SustainPine v3.0 357
AutoFact: U2-associated protein SR140 [Arabidopsis thaliana] gb|AAK25922.1|AF360212_1 unknown protein [Arabidopsis thaliana] gb|AAK64118.1| unknown protein [Arabidopsis thaliana] gb|AED93395.1| U2-associated protein SR140 [Arabidopsis thaliana] 3.0e-11
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene207246 SustainPine v3.0 532
AutoFact: Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB 3.0e-39
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 4.779e-13
C-terminus
sp_v3.0_unigene207370 SustainPine v3.0 357
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 1.0e-31
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, unclassified 6.093e-16
Putative C-terminus
sp_v3.0_unigene207399 SustainPine v3.0 464
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 1.4013e-45
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Polyprotein 1.889e-16
Putative C-terminus
sp_v3.0_unigene207410 SustainPine v3.0 597
AutoFact: OSJNBa0041A02.23 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q7XTQ1_ORYSJ 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene207417 SustainPine v3.0 266
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 2.0e-25
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Polyprotein 8.062e-13
Putative C-terminus
sp_v3.0_unigene207421 SustainPine v3.0 693
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 6.26e-21
C-terminus
sp_v3.0_unigene207434 SustainPine v3.0 447
AutoFact: Unassigned protein
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.205e-10
C-terminus
sp_v3.0_unigene207489 SustainPine v3.0 655
AutoFact: Os07g0434200 protein (Fragment) n=2 Tax=Oryza sativa RepID=Q0D6W3_ORYSJ 2.0e-22
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
C-terminus
sp_v3.0_unigene207495 SustainPine v3.0 1228
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 1.0e-31
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Polyprotein 1.349e-16
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain