Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene5465 SustainPine v3.0 2433
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8B1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 28 2.786e-08
Putative C-terminus
sp_v3.0_unigene5468 SustainPine v3.0 3217
AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene5472 SustainPine v3.0 2743
AutoFact: oligopeptidase B [Arabidopsis thaliana] gb|AAD50051.1|AC007980_16 Similar to oligopeptidases [Arabidopsis thaliana] gb|AAL84967.1| At1g50380/F14I3_27 [Arabidopsis thaliana] gb|AEE32542.1| oligopeptidase B [Arabidopsis thaliana] 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Oligopeptidase B, putative 2.694e-08
Putative Complete
sp_v3.0_unigene5506 SustainPine v3.0 1661
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene5517 SustainPine v3.0 3270
AutoFact: Flowering time control protein FCA, putative n=1 Tax=Ricinus communis RepID=B9RZT3_RICCO 0.0
FL-Next: Isoform Delta of Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA 0.0
Complete
sp_v3.0_unigene5528 SustainPine v3.0 2492
AutoFact: Poly(A) polymerase alpha, putative n=1 Tax=Ricinus communis RepID=B9SFV5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative polynucleotide adenylyltransferase 5.176e-16
Complete
sp_v3.0_unigene5557 SustainPine v3.0 2126
AutoFact: [R] COG5415 Predicted integral membrane metal-binding protein 3.0e-05
FL-Next: sp=Uncharacterized protein At2g24330; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene5563 SustainPine v3.0 2368
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pumilio-family RNA binding repeat containing protein, expressed 1.442e-11
C-terminus
sp_v3.0_unigene5567 SustainPine v3.0 1473
AutoFact: 50S ribosomal protein L21 n=4 Tax=Andropogoneae RepID=B6TJJ8_MAIZE 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 50S ribosomal protein L21 0.0
Complete
sp_v3.0_unigene5574 SustainPine v3.0 1260
AutoFact: PB1 domain, putative [Oryza sativa Japonica Group] gb|ABA93295.1| PB1 domain containing protein, expressed [Oryza sativa Japonica Group] gb|EAZ29667.1| hypothetical protein OsJ_13729 [Oryza sativa Japonica Group] dbj|BAH01706.1| unnamed protein product [O 7.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine protein kinase, putative 3.079e-13
Complete
sp_v3.0_unigene5607 SustainPine v3.0 1536
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene5612 SustainPine v3.0 3082
AutoFact: putative ubiquitin-protein ligase 1 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: E3 ubiquitin protein ligase upl2, putative 1.895e-08
C-terminus
sp_v3.0_unigene5664 SustainPine v3.0 2360
AutoFact: DUF1777 multi-domain protein 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snRNP auxiliary factor large subunit B 1.38e-15
Complete
sp_v3.0_unigene5666 SustainPine v3.0 2764
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 4.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene5702 SustainPine v3.0 2568
AutoFact: Apoptosis inhibitory protein 5 (API5) [Arabidopsis thaliana] gb|AAB67622.2| expressed protein [Arabidopsis thaliana] gb|AAM62452.1| unknown [Arabidopsis thaliana] gb|AAN72062.1| expressed protein [Arabidopsis thaliana] gb|AAQ56832.1| At2g34040 [Arabidopsi 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Chromosome chr10 scaffold_138, whole genome shotgun sequence 4.68e-06
Complete
sp_v3.0_unigene5708 SustainPine v3.0 2429
AutoFact: Exonuclease, putative n=1 Tax=Ricinus communis RepID=B9SFZ8_RICCO 0.0
FL-Next: sp=Small RNA degrading nuclease 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene5752 SustainPine v3.0 1329
AutoFact: pumilio 23 [Arabidopsis thaliana] sp|Q9C552.1|PUM23_ARATH RecName: Full=Pumilio homolog 23; Short=APUM-23; Short=AtPUM23 gb|AAG51785.1|AC067754_1 unknown protein; 96525-92929 [Arabidopsis thaliana] gb|AAG52582.1|AC016529_13 putative RNA-binding domain; 80 0.0
FL-Next: sp=Pumilio homolog 23; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene5878 SustainPine v3.0 3504
AutoFact: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTL0_RICCO 0.0
FL-Next: sp=Protein IQ-DOMAIN 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Calmodulin binding protein, putative 7.297e-06
Complete
sp_v3.0_unigene5886 SustainPine v3.0 2243
AutoFact: phenylalanyl-tRNA synthetase beta chain [Arabidopsis thaliana] sp|Q9SGE9.1|SYFB_ARATH RecName: Full=Probable phenylalanyl-tRNA synthetase beta chain; AltName: Full=Phenylalanine--tRNA ligase beta chain; Short=PheRS gb|AAG51865.1|AC010926_28 putative pheny 0.0
FL-Next: sp=Probable phenylalanine--tRNA ligase beta subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr17 scaffold_16, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene5912 SustainPine v3.0 2791
AutoFact: upstream element-binding protein [Arabidopsis thaliana] gb|AAL84954.1| F17H15.1/F17H15.1 [Arabidopsis thaliana] gb|AAM15002.1| unknown protein [Arabidopsis thaliana] gb|AAM15045.1| unknown protein [Arabidopsis thaliana] dbj|BAE98938.1| hypothetical protei 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain