Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene3890 SustainPine v3.0 2993
• AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene3905 SustainPine v3.0 1874
• AutoFact: putative ankyrin-repeat protein [Vitis aestivalis] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ankyrin repeat domain-containing protein 2 6.824e-17
Complete
sp_v3.0_unigene3943 SustainPine v3.0 2470
• AutoFact: agenet domain-containing protein [Arabidopsis thaliana] gb|AAY34173.1| At1g09320 [Arabidopsis thaliana] gb|AEE28429.1| agenet domain-containing protein [Arabidopsis thaliana] 4.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene3973 SustainPine v3.0 1599
• AutoFact: eukaryotic translation initiation factor 4E [Nicotiana benthamiana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 4E 1.485e-22
Complete
sp_v3.0_unigene4033 SustainPine v3.0 1097
• AutoFact: Unassigned protein
• FL-Next: Isoform 2 of Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 0.0
Internal
sp_v3.0_unigene4067 SustainPine v3.0 3499
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 8 dbj|BAD25226.1| putative RNA helicase [Oryza sativa Japonica Group] dbj|BAG92832.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57460.1| hypothetical protein OsJ_07688 [Oryza sativa Japon 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: eIF-4A-1 4.16e-08
Complete
sp_v3.0_unigene4075 SustainPine v3.0 1942
• AutoFact: [R] COG2319 FOG: WD40 repeat 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 1.052e-13
C-terminus
sp_v3.0_unigene4100 SustainPine v3.0 1421
• AutoFact: Abscisic acid receptor PYL4 n=2 Tax=Arabidopsis RepID=PYL4_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Bet v I allergen-like 8.553e-18
Complete
sp_v3.0_unigene4173 SustainPine v3.0 1740
• AutoFact: Abscisic acid receptor PYR1 n=1 Tax=Fragaria x ananassa RepID=F2YHU9_FRAAN 0.0
• FL-Next: sp=Abscisic acid receptor PYR1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: AT-rich element binding factor 3 4.786e-16
Complete
sp_v3.0_unigene4190 SustainPine v3.0 1442
• AutoFact: Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene4228 SustainPine v3.0 2076
• AutoFact: protein trichome birefringence-like 11 [Arabidopsis thaliana] gb|AAX23913.1| hypothetical protein At5g19160 [Arabidopsis thaliana] gb|AAZ52758.1| expressed protein [Arabidopsis thaliana] gb|AAZ52759.1| expressed protein [Arabidopsis thaliana] gb|AED92663. 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Lustrin A-like 1.47e-10
Complete
sp_v3.0_unigene4229 SustainPine v3.0 2453
• AutoFact: DUF1777 multi-domain protein 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snRNP auxiliary factor large subunit B 1.38e-15
Complete
sp_v3.0_unigene4237 SustainPine v3.0 1324
• AutoFact: RecName: Full=Protein terminal ear1 homolog; AltName: Full=Protein LEAFY HEAD2; AltName: Full=Protein PLASTOCHRON2 gb|ABD49441.1| leafy head 2 [Oryza sativa] gb|EAY76892.1| hypothetical protein OsI_04851 [Oryza sativa Indica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene4241 SustainPine v3.0 4034
• AutoFact: rve domain containing protein 4.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 7.295e-10
Complete
sp_v3.0_unigene4245 SustainPine v3.0 3060
• AutoFact: Oligopeptide transporter OPT family n=2 Tax=Populus trichocarpa RepID=B9HN76_POPTR 0.0
• FL-Next: sp=Oligopeptide transporter 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Oligopeptide transporter OPT family 1.4e-30
Complete
sp_v3.0_unigene4270 SustainPine v3.0 982
• AutoFact: Plasma membrane ATPase 4 n=3 Tax=Solanaceae RepID=PMA4_NICPL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Plasma membrane H+-ATPase 0.0
C-terminus
sp_v3.0_unigene4278 SustainPine v3.0 616
• AutoFact: Helicase, C-terminal [Medicago truncatula] 7.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 6.509e-08
Putative C-terminus
sp_v3.0_unigene4356 SustainPine v3.0 1687
• AutoFact: 30S ribosomal protein S1, chloroplastic n=1 Tax=Spinacia oleracea RepID=RR1_SPIOL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene4403 SustainPine v3.0 466
• AutoFact: Multidrug/pheromone exporter, MDR family, ABC transporter family n=5 Tax=core eudicotyledons RepID=B9IJV9_POPTR 0.0
• FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
• Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 1.358e-18
Internal
sp_v3.0_unigene4413 SustainPine v3.0 714
• AutoFact: antitermination NusB domain-containing protein [Arabidopsis thaliana] gb|AAK96755.1| putative protein [Arabidopsis thaliana] gb|AAP42720.1| At4g26370 [Arabidopsis thaliana] gb|AEE85189.1| antitermination NusB domain-containing protein [Arabidopsis thalian 6.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain