Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: small ribosomal subunit

Term: GO:0015935  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene131370 SustainPine v3.0 286
• AutoFact: 40S ribosomal protein S5-1 n=4 Tax=Arabidopsis RepID=RS51_ARATH 7.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S5 4.62e-21
N-terminus
sp_v3.0_unigene131641 SustainPine v3.0 484
• AutoFact: 40S ribosomal protein S2 n=11 Tax=Endopterygota RepID=E2ACC9_9HYME 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S2 3.936e-11
N-terminus
sp_v3.0_unigene135642 SustainPine v3.0 267
• AutoFact: LRR_4 domain containing protein 2.0e-05
• Sma3: Leucine Rich Repeat family protein 4.231e-14
unknown
sp_v3.0_unigene138217 SustainPine v3.0 132
• AutoFact: 30S ribosomal protein S12, chloroplastic n=40 Tax=Coniferales RepID=RR12_PINTH 2.0e-11
• FL-Next: sp=30S ribosomal protein S12, chloroplastic; Pinus amamiana. Plastid; Chloroplast. 0.0
• Sma3: Ribosomal protein S12 1.91e-11
N-terminus
sp_v3.0_unigene138740 SustainPine v3.0 235
• AutoFact: putative ribosomal protein S5 [Oryza sativa Japonica Group] 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S5 containing protein, expressed 9.077e-09
C-terminus
sp_v3.0_unigene140480 SustainPine v3.0 690
• AutoFact: Putative 40S Ribosomal protein [Oryza sativa Japonica Group] gb|ABF94325.1| 40S ribosomal protein SA, putative, expressed [Oryza sativa Japonica Group] gb|EAZ25828.1| hypothetical protein OsJ_09668 [Oryza sativa Japonica Group] gb|ACJ54906.1| 40S ribosoma 4.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein SA 8.518e-25
Misassembled
sp_v3.0_unigene140591 SustainPine v3.0 850
• AutoFact: 40S ribosomal protein SA n=1 Tax=Glycine max RepID=RSSA_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein SA 2.883e-36
C-terminus
sp_v3.0_unigene141876 SustainPine v3.0 516
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 5.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.11302e-41
Putative C-terminus
sp_v3.0_unigene142766 SustainPine v3.0 316
• AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 3.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 4.785e-14
N-terminus
sp_v3.0_unigene142933 SustainPine v3.0 194
• AutoFact: 40S ribosomal protein S3-1 [Arabidopsis thaliana] sp|Q9SIP7.1|RS31_ARATH RecName: Full=40S ribosomal protein S3-1 gb|AAK55690.1|AF378887_1 At2g31610/T9H9.13 [Arabidopsis thaliana] gb|AAD24852.1| 40S ribosomal protein; contains C-terminal domain [Arabidops 7.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3, putative 1.674e-08
N-terminus
sp_v3.0_unigene142956 SustainPine v3.0 536
• AutoFact: 40S ribosomal protein SA n=2 Tax=Vitis vinifera RepID=RSSA_VITVI 5.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein SA 2.883e-36
Internal
sp_v3.0_unigene143707 SustainPine v3.0 454
• AutoFact: ribosomal protein L2-like [Solanum tuberosum] 1.96182e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.296e-08
Putative Complete
sp_v3.0_unigene143812 SustainPine v3.0 524
unknown
sp_v3.0_unigene144097 SustainPine v3.0 256
• AutoFact: 40S ribosomal protein S2 n=1 Tax=Picea abies RepID=Q9AVU0_PICAB 3.0e-22
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: 40S ribosomal protein S2 3.659e-15
Putative C-terminus
sp_v3.0_unigene144141 SustainPine v3.0 404
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.75201e-41
Putative C-terminus
sp_v3.0_unigene144211 SustainPine v3.0 662
• AutoFact: Chain B, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aestivum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 1.218e-10
Complete
sp_v3.0_unigene144375 SustainPine v3.0 419
• AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 2.129e-10
Putative Complete
sp_v3.0_unigene144598 SustainPine v3.0 847
• AutoFact: PREDICTED: 40S ribosomal protein S3-like n=1 Tax=Pongo abelii RepID=UPI0001D5E2D3 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3, putative 2.319e-08
Complete
sp_v3.0_unigene144924 SustainPine v3.0 484
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Putative N-terminus
sp_v3.0_unigene145113 SustainPine v3.0 264
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.66247e-44
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain