Sustainpine_db
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Name: nucleotide binding

Term: GO:0000166  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene6189 SustainPine v3.0 1636
• AutoFact: PREDICTED: similar to TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor isoform 6 [Canis familiaris] 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6277 SustainPine v3.0 3466
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6387 SustainPine v3.0 2774
• AutoFact: PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein-1) (APP-1) isoform 17 [Canis familiaris] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Poly(A)-binding protein 1.314e-22
Complete
sp_v3.0_unigene6499 SustainPine v3.0 2309
• AutoFact: SET domain-containing protein (ISS) [Ostreococcus tauri] emb|CAL53729.1| SET domain-containing protein (ISS) [Ostreococcus tauri] 0.0
• FL-Next: sp=Probable histone-lysine N-methyltransferase ATXR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SET domain protein 2.756e-06
C-terminus
sp_v3.0_unigene6511 SustainPine v3.0 2620
• AutoFact: Phosphofructokinase, putative n=1 Tax=Ricinus communis RepID=B9RRX6_RICCO 0.0
• FL-Next: sp=6-phosphofructokinase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Phosphofructokinase, putative 3.151e-19
Complete
sp_v3.0_unigene6630 SustainPine v3.0 1344
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7C9_RICCO 1.0e-34
• FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Putative C-terminus
sp_v3.0_unigene6714 SustainPine v3.0 1947
• AutoFact: RHO guanyl-nucleotide exchange factor 7 [Arabidopsis thaliana] emb|CAB82974.1| putative protein [Arabidopsis thaliana] gb|AAU94394.1| At5g02010 [Arabidopsis thaliana] gb|AAV59279.1| At5g02010 [Arabidopsis thaliana] gb|AED90419.1| RHO guanyl-nucleotide exc 0.0
• FL-Next: sp=Rop guanine nucleotide exchange factor 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Pollen-specific kinase partner protein 5.782e-23
C-terminus
sp_v3.0_unigene6721 SustainPine v3.0 1083
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7C9_RICCO 1.0e-19
• FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
C-terminus
sp_v3.0_unigene6762 SustainPine v3.0 2672
• AutoFact: pre-mRNA-splicing factor 38B [Arabidopsis thaliana] gb|AAM13215.1| unknown protein [Arabidopsis thaliana] gb|AAP68295.1| At5g37370 [Arabidopsis thaliana] gb|AED94173.1| pre-mRNA-splicing factor 38B [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6783 SustainPine v3.0 1187
• AutoFact: small nuclear ribonucleoprotein 31 kDa protein [Arabidopsis thaliana] gb|AAG51392.1|AC011560_24 hypothetical protein; 114721-113936 [Arabidopsis thaliana] gb|AAV31168.1| At3g10400 [Arabidopsis thaliana] gb|AAX49371.1| At3g10400 [Arabidopsis thaliana] gb|A 0.0
• FL-Next: sp=Serine/arginine-rich splicing factor RSZ23; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA binding protein 2.383e-06
Complete
sp_v3.0_unigene6847 SustainPine v3.0 900
• AutoFact: ATP binding protein [Arabidopsis thaliana] gb|AAR97892.1| [4Fe-4S] cluster assembly factor [Arabidopsis thaliana] dbj|BAE98532.1| putative mrp protein [Arabidopsis thaliana] gb|AEE76897.1| ATP binding protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein mrp, putative 3.168e-09
Putative C-terminus
sp_v3.0_unigene6870 SustainPine v3.0 1068
• AutoFact: Putative DNA-binding protein n=2 Tax=Arabidopsis thaliana RepID=O81047_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein smubp-2, putative 5.596e-09
C-terminus
sp_v3.0_unigene6993 SustainPine v3.0 2204
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7198 SustainPine v3.0 2039
• AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 0.0
• FL-Next: sp=Glycine-rich RNA-binding protein 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene7222 SustainPine v3.0 1445
• AutoFact: Os02g0252100 protein n=7 Tax=Oryza sativa RepID=Q6K542_ORYSJ 9.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7248 SustainPine v3.0 1513
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene7292 SustainPine v3.0 2479
• AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Poly(A)-binding protein 6.848e-34
Complete
sp_v3.0_unigene7364 SustainPine v3.0 1436
• AutoFact: Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SQT1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene7375 SustainPine v3.0 1965
• AutoFact: RNA recognition motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SU08_RICCO 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein AT4g12640 5.848e-06
C-terminus
sp_v3.0_unigene7469 SustainPine v3.0 1823
• AutoFact: pfam01762, Galactosyl_T, Galactosyltransferase 5.60519e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-1,3-galactosyltransferase sqv-2, putative 6.759e-23
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain