Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleotide binding

Term: GO:0000166  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene4489 SustainPine v3.0 603
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Putative polyprotein 1.103e-09
C-terminus
sp_v3.0_unigene4621 SustainPine v3.0 752
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized protein ycf45; Porphyra purpurea. Plastid; Chloroplast. 0.0
Sma3: Uncharacterized protein ycf45 4.794e-12
Putative N-terminus
sp_v3.0_unigene4651 SustainPine v3.0 1309
AutoFact: putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 7.554e-09
Complete
sp_v3.0_unigene4803 SustainPine v3.0 1607
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAB03120.1| unnamed protein product [Arabidopsis thaliana] gb|AAL85976.1| unknown protein [Arabidopsis thaliana] gb|AAM67536.1| unknown protein [Arabidopsis thaliana] dbj|BAD94504.1| hypo 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene4926 SustainPine v3.0 251
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 3.217e-11
C-terminus
sp_v3.0_unigene5005 SustainPine v3.0 950
AutoFact: peroxidase 7 [Arabidopsis thaliana] sp|Q9SY33.1|PER7_ARATH RecName: Full=Peroxidase 7; Short=Atperox P7; AltName: Full=ATP30; Flags: Precursor gb|AAD32944.1|AC004135_19 T17H7.19 [Arabidopsis thaliana] gb|AAF98194.1|AC000107_17 F17F8.26 [Arabidopsis thalia 0.0
FL-Next: tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Peroxidase 0.0
Putative C-terminus
sp_v3.0_unigene5068 SustainPine v3.0 631
AutoFact: molybdenum cofactor biosynthesis protein [Zea mays] 8.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene5159 SustainPine v3.0 610
AutoFact: DUF1777 multi-domain protein 5.0e-14
coding
sp_v3.0_unigene5468 SustainPine v3.0 3217
AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene5517 SustainPine v3.0 3270
AutoFact: Flowering time control protein FCA, putative n=1 Tax=Ricinus communis RepID=B9RZT3_RICCO 0.0
FL-Next: Isoform Delta of Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA 0.0
Complete
sp_v3.0_unigene5641 SustainPine v3.0 1815
AutoFact: putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene5664 SustainPine v3.0 2360
AutoFact: DUF1777 multi-domain protein 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snRNP auxiliary factor large subunit B 1.38e-15
Complete
sp_v3.0_unigene5666 SustainPine v3.0 2764
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 4.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene5794 SustainPine v3.0 1845
AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-binding region-containing protein, putative 4.112e-15
Putative Complete
sp_v3.0_unigene5879 SustainPine v3.0 1905
AutoFact: Heterogeneous nuclear ribonucleoprotein 27C, putative n=1 Tax=Ricinus communis RepID=B9SSS5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 5.805e-16
Complete
sp_v3.0_unigene5897 SustainPine v3.0 3762
AutoFact: RNA-binding protein MEI2, putative; 36123-32976 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AML1 7.558e-26
Complete
sp_v3.0_unigene6039 SustainPine v3.0 1838
AutoFact: DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO 0.0
FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Splicing factor 45 4.622e-09
Complete
sp_v3.0_unigene6045 SustainPine v3.0 1706
AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor, arginine/serine-rich 2 7.149e-16
Complete
sp_v3.0_unigene6059 SustainPine v3.0 2170
AutoFact: Heterogeneous nuclear ribonucleoprotein A1/A3 n=2 Tax=Arabidopsis RepID=Q9FM47_ARATH 7.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At3g13224 1.284e-08
Putative Complete
sp_v3.0_unigene6169 SustainPine v3.0 2912
AutoFact: Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA-directed RNA polymerase 1.459e-23
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain