Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleotide binding

Term: GO:0000166  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2575 SustainPine v3.0 1422
AutoFact: RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana] dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96804.1| Unknown prot 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene2653 SustainPine v3.0 1788
AutoFact: MEI2-like protein 4 [Arabidopsis thaliana] sp|Q9LYN7.1|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb|CAB87285.1| Mei2-like protein [Arabidopsis thaliana] dbj|BAE99028.1| Mei2-like protein [Arabidopsis thal 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AML1 8.073e-26
C-terminus
sp_v3.0_unigene2663 SustainPine v3.0 1975
AutoFact: Squamous cell carcinoma antigen recognized by T-cells, putative n=1 Tax=Ricinus communis RepID=B9SPA3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene2721 SustainPine v3.0 1764
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene2771 SustainPine v3.0 1856
AutoFact: putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2792 SustainPine v3.0 2249
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: ALY protein 1.887e-16
Complete
sp_v3.0_unigene2802 SustainPine v3.0 1791
AutoFact: ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor, putative 1.89e-13
Complete
sp_v3.0_unigene2832 SustainPine v3.0 2566
AutoFact: RNA-binding protein [Arabidopsis thaliana] gb|AAK52994.1|AF375410_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK56266.1|AF367277_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK06847.1| VirF-interacting protein FIP1 [Arabidopsis thaliana] gb|AAL0708 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Lupus la ribonucleoprotein, putative 2.064e-10
Complete
sp_v3.0_unigene2875 SustainPine v3.0 2214
AutoFact: RHO guanyl-nucleotide exchange factor 14 [Arabidopsis thaliana] dbj|BAD94650.1| hypothetical protein [Arabidopsis thaliana] gb|AEE31380.1| RHO guanyl-nucleotide exchange factor 14 [Arabidopsis thaliana] 0.0
FL-Next: sp=Rop guanine nucleotide exchange factor 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Rop guanine nucleotide exchange factor, putative 9.655e-23
C-terminus
sp_v3.0_unigene2917 SustainPine v3.0 1723
AutoFact: nucleic acid binding protein1 [Zea mays] gb|AAA33486.1| nucleic acid-binding protein [Zea mays] gb|ACG38158.1| ribonucleoprotein [Zea mays] gb|ACL52389.1| unknown [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene2918 SustainPine v3.0 550
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 2.156e-11
C-terminus
sp_v3.0_unigene2922 SustainPine v3.0 993
AutoFact: RNA binding motif protein 19 [Gallus gallus] ref|XP_001233414.1| PREDICTED: RNA binding motif protein 19 [Gallus gallus] 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene2949 SustainPine v3.0 2074
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974937.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAK92731.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM20100.1| putative RNA-binding protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 3.03e-11
Complete
sp_v3.0_unigene3158 SustainPine v3.0 2155
AutoFact: PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio] 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene3169 SustainPine v3.0 1774
AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-binding region-containing protein, putative 2.424e-15
Complete
sp_v3.0_unigene3186 SustainPine v3.0 1077
AutoFact: Os07g0673500 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q0D3Q1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor, putative 1.249e-13
N-terminus
sp_v3.0_unigene3248 SustainPine v3.0 2635
AutoFact: putative imbibition protein [Brassica oleracea] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Seed imbibition protein 6.192e-15
Complete
sp_v3.0_unigene3274 SustainPine v3.0 640
AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 6.23199e-41
N-terminus
sp_v3.0_unigene3296 SustainPine v3.0 2028
AutoFact: putative type 1 RNA helicase [Oryza sativa Japonica Group] gb|EEE67210.1| hypothetical protein OsJ_24327 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptide deformylase 1.11e-15
Putative Complete
sp_v3.0_unigene3308 SustainPine v3.0 1448
AutoFact: Tir-nbs resistance protein n=1 Tax=Populus trichocarpa RepID=B9GWT3_POPTR 0.0
FL-Next: tr=Tir-nbs resistance protein; subsp. trichocarpa). 0.0
Sma3: Tir-nbs resistance protein 7.241e-08
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain