Sustainpine_db
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Name: nucleotide binding

Term: GO:0000166  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene20875 SustainPine v3.0 654
• AutoFact: Unassigned protein 4.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene20973 SustainPine v3.0 827
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AED92690.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nuclear acid binding protein, putative 6.993e-23
C-terminus
sp_v3.0_unigene21071 SustainPine v3.0 1476
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U1 small nuclear ribonucleoprotein 6.725e-12
Putative Complete
sp_v3.0_unigene21141 SustainPine v3.0 1075
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 2.0e-22
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene21265 SustainPine v3.0 989
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene21310 SustainPine v3.0 894
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene21340 SustainPine v3.0 2493
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene21357 SustainPine v3.0 1302
• AutoFact: Biotin carboxylase carrier protein n=1 Tax=Solanum lycopersicum RepID=Q84T86_SOLLC 5.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene21606 SustainPine v3.0 533
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 9.0e-29
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative N-terminus
sp_v3.0_unigene21859 SustainPine v3.0 554
• AutoFact: RNA recognition domain-containing protein n=1 Tax=Glomerella graminicola M1.001 RepID=E3QVY2_COLGM 5.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyadenylate-binding protein 2 9.755e-15
Putative Complete
sp_v3.0_unigene21865 SustainPine v3.0 552
• AutoFact: RNA-binding protein precursor [Nicotiana tabacum] 2.0e-15
• FL-Next: tr=Glycine-rich RNA-binding protein; Sequoia sempervirens (California redwood) (Taxodium sempervirens). 0.0
• Sma3: RNA-binding protein 3.116e-06
N-terminus
sp_v3.0_unigene21964 SustainPine v3.0 2847
• AutoFact: Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9T139_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Seed imbibition protein 7.762e-15
Complete
sp_v3.0_unigene21976 SustainPine v3.0 2481
• AutoFact: cleavage stimulating factor 64 [Arabidopsis thaliana] gb|AAF43233.1|AC012654_17 Contains similarity to the polyadenylation factor 64 kDa subunit from Xenopus laevis gb|U17394; It contains RNA recognition motif PF|00076. ESTs gb|AI993960 and T42211 come fr 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene22013 SustainPine v3.0 406
• AutoFact: ATP-binding cassette transporter, subfamily G, member 21, group PDR protein PpABCG21 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T7W7_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
Internal
sp_v3.0_unigene22146 SustainPine v3.0 670
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.064e-38
Internal
sp_v3.0_unigene22148 SustainPine v3.0 809
• AutoFact: Nucleic acid binding protein n=2 Tax=Andropogoneae RepID=B6T2N7_MAIZE 8.96831e-44
• FL-Next: tr=Putative uncharacterized protein Sb06g027580; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
C-terminus
sp_v3.0_unigene22172 SustainPine v3.0 463
• AutoFact: 5x RRM. Mrd1p like, splicing related [Cryptosporidium parvum Iowa II] emb|CAD98287.1| RNA-binding domain protein [Cryptosporidium parvum] gb|EAK90057.1| 5x RRM. Mrd1p like, splicing related [Cryptosporidium parvum Iowa II] 1.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene22277 SustainPine v3.0 1002
• AutoFact: putative beta-1,3-galactosyltransferase 2 [Arabidopsis thaliana] gb|AAK63859.1|AF389287_1 At1g05170/YUP8H12_22 [Arabidopsis thaliana] gb|AAB71461.1| Similar to Sequence 10 from patent 5477002 (gb|1253956) [Arabidopsis thaliana] gb|AAM47315.1| At1g05170/YU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-1,3-galactosyltransferase sqv-2, putative 2.881e-23
Putative Complete
sp_v3.0_unigene22530 SustainPine v3.0 2047
• AutoFact: putative beta-1,3-galactosyltransferase 2 [Arabidopsis thaliana] gb|AAK63859.1|AF389287_1 At1g05170/YUP8H12_22 [Arabidopsis thaliana] gb|AAB71461.1| Similar to Sequence 10 from patent 5477002 (gb|1253956) [Arabidopsis thaliana] gb|AAM47315.1| At1g05170/YU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-1,3-galactosyltransferase sqv-2, putative 5.514e-23
Complete
sp_v3.0_unigene22580 SustainPine v3.0 3531
• AutoFact: homeodomain-leucine zipper protein 57 [Glycine max] 5.0e-34
• FL-Next: Isoform 2 of Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 0.0
• Sma3: Homeobox protein, putative 3.486e-21
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain