Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: vesicle-mediated transport

Term: GO:0016192  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene94293 SustainPine v3.0 696
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene94963 SustainPine v3.0 287
• AutoFact: clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] gb|AAL58937.1|AF462850_1 At2g20790/F5H14.24 [Arabidopsis thaliana] gb|AAL90943.1| At2g20790/F5H14.24 [Arabidopsis thaliana] gb|AEC07073.1| clathrin adaptor complexes medium su 5.0e-38
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene95647 SustainPine v3.0 488
• AutoFact: DNA repair protein RAD50 [Arabidopsis thaliana] sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA repair protein RAD50; Short=AtRAD50 gb|AAF36810.1|AF168748_1 DNA repair-recombination protein [Arabidopsis thaliana] gb|AAD15407.2| putative RAD50 DNA repair protein 0.0
• FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Rad50 DNA repair/recombination protein 2.261e-13
C-terminus
sp_v3.0_unigene96049 SustainPine v3.0 521
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SRS4_RICCO 0.0
• FL-Next: tr=VP1/ABI3-like protein; Callitropsis nootkatensis. 0.0
• Sma3: Transcription factor, putative 9.846e-07
Internal
sp_v3.0_unigene99463 SustainPine v3.0 669
• AutoFact: putative RAD50 DNA repair protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene99550 SustainPine v3.0 735
• AutoFact: Syntaxin 81, putative [Oryza sativa Japonica Group] 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Syntaxin 81 2.116e-09
Internal
sp_v3.0_unigene99613 SustainPine v3.0 1303
• AutoFact: R-SNARE, SEC22-family n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S6L9_PHYPA 5.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 25.3 kDa vesicle transport protein 3.223e-09
Complete
sp_v3.0_unigene99793 SustainPine v3.0 480
• AutoFact: Vesicular-fusion protein nsf, putative n=1 Tax=Ricinus communis RepID=B9RZA0_RICCO 6.0e-07
• FL-Next: sp=Vesicle-fusing ATPase; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene100126 SustainPine v3.0 281
• AutoFact: clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] gb|AAL58937.1|AF462850_1 At2g20790/F5H14.24 [Arabidopsis thaliana] gb|AAL90943.1| At2g20790/F5H14.24 [Arabidopsis thaliana] gb|AEC07073.1| clathrin adaptor complexes medium su 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene100739 SustainPine v3.0 422
• AutoFact: Beta-adaptin-like protein A n=3 Tax=Arabidopsis RepID=APBLA_ARATH 2.0e-24
• FL-Next: sp=Beta-adaptin-like protein A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Misassembled
sp_v3.0_unigene100815 SustainPine v3.0 352
• AutoFact: PRA1 family protein B4 n=2 Tax=Arabidopsis RepID=PR1B4_ARATH 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Prenylated Rab receptor 2 8.369e-11
Putative C-terminus
sp_v3.0_unigene102750 SustainPine v3.0 837
• AutoFact: AP-3 complex subunit delta [Arabidopsis thaliana] ref|NP_849785.1| AP-3 complex subunit delta [Arabidopsis thaliana] ref|NP_001031156.1| AP-3 complex subunit delta [Arabidopsis thaliana] sp|Q9C744.1|AP3D_ARATH RecName: Full=AP-3 complex subunit delta; Alt 9.0e-23
• FL-Next: sp=AP-3 complex subunit delta; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene103389 SustainPine v3.0 469
• AutoFact: ABI3L domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIL3_MALDO 4.0e-16
• FL-Next: Isoform 2 of B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 0.0
Internal
sp_v3.0_unigene103414 SustainPine v3.0 439
• AutoFact: putative adaptor-related protein complex AP-3, beta 2 subunit [Oryza sativa Japonica Group] dbj|BAD87418.1| putative adaptor-related protein complex AP-3, beta 2 subunit [Oryza sativa Japonica Group] gb|EAZ15002.1| hypothetical protein OsJ_04940 [Oryza sa 4.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene104852 SustainPine v3.0 491
• AutoFact: DNA repair protein RAD50 [Arabidopsis thaliana] sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA repair protein RAD50; Short=AtRAD50 gb|AAF36810.1|AF168748_1 DNA repair-recombination protein [Arabidopsis thaliana] gb|AAD15407.2| putative RAD50 DNA repair protein 7.0e-30
• FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene105667 SustainPine v3.0 464
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene107383 SustainPine v3.0 432
• AutoFact: AP-3 complex subunit delta [Arabidopsis thaliana] ref|NP_849785.1| AP-3 complex subunit delta [Arabidopsis thaliana] ref|NP_001031156.1| AP-3 complex subunit delta [Arabidopsis thaliana] sp|Q9C744.1|AP3D_ARATH RecName: Full=AP-3 complex subunit delta; Alt 5.00264e-43
• FL-Next: sp=AP-3 complex subunit delta; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene107843 SustainPine v3.0 464
• AutoFact: Syntaxin, putative n=1 Tax=Ricinus communis RepID=B9RFG2_RICCO 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene110515 SustainPine v3.0 276
• AutoFact: polyprotein [Glycine max] 1.0e-22
• FL-Next: tr=Disease resistance protein; pekinensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 9.982e-22
Internal
sp_v3.0_unigene114718 SustainPine v3.0 234
• AutoFact: AP-3 complex subunit delta [Arabidopsis thaliana] ref|NP_849785.1| AP-3 complex subunit delta [Arabidopsis thaliana] ref|NP_001031156.1| AP-3 complex subunit delta [Arabidopsis thaliana] sp|Q9C744.1|AP3D_ARATH RecName: Full=AP-3 complex subunit delta; Alt 8.0e-22
• FL-Next: sp=AP-3 complex subunit delta; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain