Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene207787 SustainPine v3.0 549
AutoFact: Putative DEAD-box protein abstrakt n=1 Tax=Trifolium pratense RepID=Q2PEY4_TRIPR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 9.916e-12
Internal
sp_v3.0_unigene207818 SustainPine v3.0 489
AutoFact: Galactolipid galactosyltransferase n=1 Tax=Chlamydomonas reinhardtii RepID=A8HU66_CHLRE 0.0
FL-Next: Isoform 2 of Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DGD1 0.0
Sma3: Digalactosyldiacylglycerol synthase 2, chloroplastic 2.329e-12
Internal
sp_v3.0_unigene207821 SustainPine v3.0 480
AutoFact: Os03g0374575 protein n=4 Tax=Oryza sativa RepID=C7J0R1_ORYSJ 6.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/arginine rich splicing factor, putative 3.74e-08
Putative Complete
sp_v3.0_unigene207829 SustainPine v3.0 474
AutoFact: peptide alpha-N-acetyltransferase [Arabidopsis thaliana] dbj|BAB10599.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96745.1| Unknown protein [Arabidopsis thaliana] gb|AAL47392.1| unknown protein [Arabidopsis thaliana] gb|AAM64579.1| silencing gr 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Silencing group B protein 1.508e-11
N-terminus
sp_v3.0_unigene207834 SustainPine v3.0 471
AutoFact: cold inducible histidine kinase 1 [Catharanthus roseus] 4.0e-14
FL-Next: sp=Histidine kinase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histidine kinase osmosensor protein 2.783e-09
Internal
sp_v3.0_unigene207847 SustainPine v3.0 454
AutoFact: Laccase n=1 Tax=Pinus taeda RepID=Q9AUH9_PINTA 0.0
FL-Next: tr=Laccase; Pinus taeda (Loblolly pine). 0.0
Sma3: Laccase 0.0
Putative C-terminus
sp_v3.0_unigene207928 SustainPine v3.0 348
AutoFact: RRM_1 domain containing protein 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene208314 SustainPine v3.0 827
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAF00572.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AEC10094.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At2g42245/T24P15.1 5.331e-09
N-terminus
sp_v3.0_unigene208316 SustainPine v3.0 511
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene208391 SustainPine v3.0 417
AutoFact: small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] ref|NP_001189837.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] gb|AAF13077.1|AC009176_4 putative small nuclear ribonucleoprotein (Sm-D1) [Arabidopsis thaliana] gb|AAL47458.1| AT3g075 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene208408 SustainPine v3.0 1259
AutoFact: putative calcium/calmodulin-regulated receptor-like kinase [Oryza sativa Japonica Group] dbj|BAB92857.1| putative calcium/calmodulin-regulated receptor-like kinase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Receptor protein kinase-like 1.428e-13
N-terminus
sp_v3.0_unigene208410 SustainPine v3.0 561
AutoFact: DUF221 domain containing protein 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Early-responsive to dehydration protein, putative, expressed 2.304e-08
Internal
sp_v3.0_unigene208431 SustainPine v3.0 531
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RZN5_RICCO 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene208468 SustainPine v3.0 627
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 9.99967e-42
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene208512 SustainPine v3.0 996
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene208526 SustainPine v3.0 797
AutoFact: Mei2-like protein (Fragment) n=1 Tax=Pinus taeda RepID=Q6J741_PINTA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AML1 1.234e-25
Internal
sp_v3.0_unigene208534 SustainPine v3.0 827
AutoFact: putative CCR4-associated factor 1-7 [Arabidopsis thaliana] sp|Q9SKZ2.2|CAF1G_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 7 gb|AAK93623.1| putative CCR4-associated factor [Arabidopsis thaliana] gb|AAD15397.2| putative CCR4-associated fact 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ccr4-associated factor, putative 6.357e-19
Complete
sp_v3.0_unigene208539 SustainPine v3.0 876
AutoFact: putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor, putative 1.249e-13
Putative C-terminus
sp_v3.0_unigene208580 SustainPine v3.0 396
AutoFact: Equilibrative nucleoside transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9INU8_POPTR 3.00004e-41
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Equilibrative nucleoside transporter 6.493e-22
Internal
sp_v3.0_unigene208593 SustainPine v3.0 481
AutoFact: Zinc finger CCCH domain-containing protein 37 n=3 Tax=Arabidopsis RepID=C3H37_ARATH 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain