Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene204472 SustainPine v3.0 572
• AutoFact: ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] emb|CAL55992.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 27 1.176e-08
Putative N-terminus
sp_v3.0_unigene204483 SustainPine v3.0 179
• AutoFact: ATP-dependent RNA helicase-like protein [Oryza sativa Japonica Group] dbj|BAD32021.1| ATP-dependent RNA helicase-like protein [Oryza sativa Japonica Group] 2.0e-09
• FL-Next: tr=Predicted protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene204625 SustainPine v3.0 411
• AutoFact: glycine-rich RNA-binding protein 2 [Arabidopsis thaliana] gb|AEE83336.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana] 3.0e-22
• FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Complete
sp_v3.0_unigene204773 SustainPine v3.0 462
• AutoFact: Retinoblastoma-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SXE4_RICCO 2.0e-06
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene204872 SustainPine v3.0 365
• AutoFact: pfam01428, zf-AN1, AN1-like Zinc finger 7.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zinc finger protein 7.11e-09
C-terminus
sp_v3.0_unigene205017 SustainPine v3.0 317
• AutoFact: PREDICTED: similar to small nuclear ribonucleoprotein E n=1 Tax=Ciona intestinalis RepID=UPI000180B612 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein E 3.573e-12
Putative Complete
sp_v3.0_unigene205054 SustainPine v3.0 437
• AutoFact: Gamma tonoplast intrinsic protein n=1 Tax=Pyrus communis RepID=Q9FXM0_PYRCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Aquaporin, MIP family, TIP subfamily 3.09687e-43
N-terminus
sp_v3.0_unigene205295 SustainPine v3.0 428
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene205475 SustainPine v3.0 404
• AutoFact: Glutaredoxin n=2 Tax=rosids RepID=B9GF65_POPTR 5.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glutaredoxin 0.0
N-terminus
sp_v3.0_unigene205666 SustainPine v3.0 431
• AutoFact: GRP multi-domain protein 3.0e-14
• Sma3: Putative glycine rich protein 1.101e-24
coding
sp_v3.0_unigene205921 SustainPine v3.0 532
• AutoFact: DUF659 domain containing protein 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Transposase-like protein 3.668e-06
Internal
sp_v3.0_unigene206031 SustainPine v3.0 525
• AutoFact: Aquaporin-like protein n=1 Tax=Picea abies RepID=O65860_PICAB 6.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Aquaporin, MIP family, TIP subfamily 6.05361e-43
Putative Complete
sp_v3.0_unigene206053 SustainPine v3.0 441
• AutoFact: PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like isoform 1 [Apis mellifera] 3.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
Complete
sp_v3.0_unigene206247 SustainPine v3.0 409
• AutoFact: Copia-type polyprotein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCE4_CUCME 5.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.286e-21
Internal
sp_v3.0_unigene206286 SustainPine v3.0 1024
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_13.assembly12x (Fragment) n=5 Tax=Vitis vinifera RepID=D7U728_VITVI 0.0
• FL-Next: sp=Germin-like protein 1-3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Germin-like protein 3.729e-40
Complete
sp_v3.0_unigene206417 SustainPine v3.0 548
• AutoFact: DNA-directed RNA polymerase subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SFI8_PHYPA 4.0e-26
• FL-Next: sp=DNA-directed RNA polymerase subunit; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: Transcription factor S-II family protein, expressed 7.797e-06
N-terminus
sp_v3.0_unigene206478 SustainPine v3.0 470
• AutoFact: Unassigned protein 1.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nuclear acid binding protein, putative 4.413e-12
C-terminus
sp_v3.0_unigene206575 SustainPine v3.0 504
• AutoFact: Actophorin n=1 Tax=Acanthamoeba castellanii RepID=ACTP_ACACA 0.0
• FL-Next: sp=Actin-depolymerizing factor 6; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Actin-depolymerizing factor 6.018e-14
Complete
sp_v3.0_unigene206584 SustainPine v3.0 515
• AutoFact: RVT_2 domain containing protein 8.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.432e-10
Putative C-terminus
sp_v3.0_unigene206606 SustainPine v3.0 481
• AutoFact: EF hand family protein n=1 Tax=Zea mays RepID=B6U4W9_MAIZE 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain