Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene191499 SustainPine v3.0 373
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 3.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OB-fold nucleic acid binding domain containing protein 3.107e-15
C-terminus
sp_v3.0_unigene191815 SustainPine v3.0 559
• AutoFact: Putative rrm-type rna binding protein n=2 Tax=Metarhizium RepID=E9ECY5_METAQ 2.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyadenylate-binding protein 2 2.539e-15
C-terminus
sp_v3.0_unigene191931 SustainPine v3.0 491
• AutoFact: myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus tauri] emb|CAL55333.1| myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus tauri] 8.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene192042 SustainPine v3.0 161
• AutoFact: CCCH-type Zn-finger protein (ISS) [Ostreococcus tauri] emb|CAL52924.1| CCCH-type Zn-finger protein (ISS) [Ostreococcus tauri] 2.0e-12
• FL-Next: sp=Zinc finger CCCH domain-containing protein 14; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene192159 SustainPine v3.0 531
• AutoFact: EF hand family protein [Tetrahymena thermophila] gb|EAS06746.1| EF hand family protein [Tetrahymena thermophila SB210] 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Centrin 2.353e-18
C-terminus
sp_v3.0_unigene192582 SustainPine v3.0 493
• AutoFact: PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis mellifera] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 2.805e-09
Internal
sp_v3.0_unigene192771 SustainPine v3.0 481
• AutoFact: ATP-binding cassette, sub-family F, member 2-like [Danio rerio] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette superfamily 1.732e-09
C-terminus
sp_v3.0_unigene192876 SustainPine v3.0 454
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
N-terminus
sp_v3.0_unigene193073 SustainPine v3.0 351
• AutoFact: PREDICTED: probable RNA-binding protein 19 [Macaca mulatta] 8.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene193124 SustainPine v3.0 443
• AutoFact: glycine-rich RNA binding protein, putative [Arabidopsis thaliana] 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 7 4.271e-07
C-terminus
sp_v3.0_unigene193186 SustainPine v3.0 446
• AutoFact: Excinuclease ABC, A subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FBB4_FLAJ1 0.0
• FL-Next: tr=Peptide exporter, ABC transporter family protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene193311 SustainPine v3.0 607
• AutoFact: 60S ribosomal protein L6 (Fragment) n=1 Tax=Chara globularis RepID=Q5KU23_CHAGO 9.80909e-45
• FL-Next: sp=60S ribosomal protein L6; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L6 0.0
C-terminus
sp_v3.0_unigene193502 SustainPine v3.0 445
• AutoFact: TT_ORF1 multi-domain protein 1.0e-06
coding
sp_v3.0_unigene193628 SustainPine v3.0 499
• AutoFact: Zinc finger protein n=1 Tax=Ciona intestinalis RepID=Q1RLC0_CIOIN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein smubp-2, putative 7.567e-09
Putative C-terminus
sp_v3.0_unigene193642 SustainPine v3.0 438
• AutoFact: Putative centrin n=1 Tax=Neospora caninum Liverpool RepID=F0VGK6_NEOCA 4.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Centrin 2.934e-25
Complete
sp_v3.0_unigene193968 SustainPine v3.0 570
• AutoFact: Integrase n=1 Tax=Boechera divaricarpa RepID=B6REL8_9BRAS 2.0e-39
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.18e-18
C-terminus
sp_v3.0_unigene194067 SustainPine v3.0 754
• AutoFact: splicing factor 3A subunit 3 [Arabidopsis thaliana] dbj|BAB09681.1| splicing factor 3a [Arabidopsis thaliana] gb|AAK64048.1| putative splicing factor 3a [Arabidopsis thaliana] gb|AAM44910.1| putative splicing factor 3a protein [Arabidopsis thaliana] gb|AE 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene194388 SustainPine v3.0 470
• AutoFact: OB-fold nucleic acid binding domain containing protein n=2 Tax=Zea mays RepID=B6U0S5_MAIZE 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene194558 SustainPine v3.0 303
• AutoFact: RVT_2 domain containing protein 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative polyprotein 1.842e-07
N-terminus
sp_v3.0_unigene194746 SustainPine v3.0 420
• AutoFact: Unassigned protein 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain