Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene189723 SustainPine v3.0 456
• AutoFact: Chloroplast biogenesis protein n=1 Tax=Lotus japonicus RepID=Q8GZD1_LOTJA 9.0e-20
• FL-Next: sp=Cytochrome c-type biogenesis ccda-like chloroplastic protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: C-type cytochrome biogenesis protein 4.882e-14
C-terminus
sp_v3.0_unigene189770 SustainPine v3.0 289
• AutoFact: BRI1-KD interacting protein 117 (Fragment) n=4 Tax=Oryza sativa RepID=Q761Z7_ORYSJ 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene189848 SustainPine v3.0 461
• AutoFact: S-locus lectin protein kinase-like protein [Arabidopsis thaliana] sp|O64477.1|Y2913_ARATH RecName: Full=G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130; Flags: Precursor gb|AAD12030.1| putative receptor-like protein kinase [Arabido 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-receptor kinase, putative 4.952e-16
Internal
sp_v3.0_unigene189926 SustainPine v3.0 177
• AutoFact: Gly_rich multi-domain protein 1.0e-09
unknown
sp_v3.0_unigene190107 SustainPine v3.0 340
• AutoFact: U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Osmerus mordax RepID=C1BKM3_OSMMO 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene190190 SustainPine v3.0 397
• AutoFact: GRP multi-domain protein 2.0e-11
• Sma3: Putative glycine rich protein 6.261e-22
coding
sp_v3.0_unigene190453 SustainPine v3.0 360
• AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SBS3_PHYPA 7.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
N-terminus
sp_v3.0_unigene190499 SustainPine v3.0 426
• AutoFact: KRTAP multi-domain protein 2.0e-09
coding
sp_v3.0_unigene190639 SustainPine v3.0 365
• AutoFact: Eukaryotic initiation factor 4A-III n=1 Tax=Caligus clemensi RepID=C1C237_9MAXI 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 9.226e-09
N-terminus
sp_v3.0_unigene190747 SustainPine v3.0 324
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 2.0e-14
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene190804 SustainPine v3.0 496
• AutoFact: RNase P protein subunit [Dictyostelium discoideum AX4] gb|EAL66686.1| RNase P protein subunit [Dictyostelium discoideum AX4] 0.0001
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Os08g0192900 protein 8.285e-06
Putative C-terminus
sp_v3.0_unigene190884 SustainPine v3.0 336
• AutoFact: F6N18.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LPK1_ARATH 9.0e-31
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Copia-type polyprotein 1.692e-10
Putative C-terminus
sp_v3.0_unigene190908 SustainPine v3.0 267
• AutoFact: Putative DEAD-box protein abstrakt n=1 Tax=Trifolium pratense RepID=Q2PEY4_TRIPR 5.0e-06
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene190946 SustainPine v3.0 152
• AutoFact: RecName: Full=Probable aldehyde oxidase 3; Short=AO-3 gb|AAO24918.1| putative aldehyde oxidase [Oryza sativa Japonica Group] gb|ABF99281.1| Aldehyde oxidase 1, putative, expressed [Oryza sativa Japonica Group] dbj|BAH01196.1| unnamed protein product [Oryz 7.0e-11
• FL-Next: sp=Probable aldehyde oxidase 3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Aldehyde oxidase 1 4.079e-07
Internal
sp_v3.0_unigene191006 SustainPine v3.0 265
• AutoFact: Protein kinase-related protein n=1 Tax=Glycine max RepID=C6ZRT3_SOYBN 5.0e-11
• FL-Next: sp=Wall-associated receptor kinase-like 15; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene191064 SustainPine v3.0 447
• AutoFact: small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A] gb|EAA31888.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A] 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
Putative Complete
sp_v3.0_unigene191246 SustainPine v3.0 483
• AutoFact: Eukaryotic initiation factor 4A-III, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N6A8_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 3.282e-09
C-terminus
sp_v3.0_unigene191273 SustainPine v3.0 272
• AutoFact: PREDICTED: similar to U1 small nuclear ribonucleoprotein A [Nasonia vitripennis] 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene191359 SustainPine v3.0 491
• AutoFact: small nuclear ribonucleoprotein E [Arabidopsis thaliana] ref|XP_002867355.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp. lyrata] gb|AAM65292.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana] dbj|BAD42875.1| small nucl 5.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein E 3.573e-12
Complete
sp_v3.0_unigene191383 SustainPine v3.0 534
• AutoFact: Probable eukaryotic initiation factor 4A n=5 Tax=Trypanosoma RepID=IF4A_TRYBB 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 2 4.041e-08
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain