Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene183723 SustainPine v3.0 981
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RUQ0_RICCO 1.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene183762 SustainPine v3.0 407
• AutoFact: cysteine-rich receptor-like protein kinase 7 [Arabidopsis thaliana] sp|Q8L7G3.1|CRK7_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 7; Short=Cysteine-rich RLK7; Flags: Precursor gb|AAM91654.1| putative serine/threonine kinase [Arabidopsis 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_278, whole genome shotgun sequence 1.651e-15
Internal
sp_v3.0_unigene183774 SustainPine v3.0 470
• AutoFact: relative of early flowering 6 protein [Arabidopsis thaliana] emb|CAB41155.1| putative zinc finger protein [Arabidopsis thaliana] gb|AAT77779.1| relative of early flowering 6 [Arabidopsis thaliana] gb|AEE78416.1| relative of early flowering 6 protein [Arab 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene183836 SustainPine v3.0 310
• AutoFact: polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb|AAU90050.1 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene183838 SustainPine v3.0 560
• AutoFact: F5K24.2 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZPG3_ARATH 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyprotein, putative 4.764e-06
Internal
sp_v3.0_unigene183841 SustainPine v3.0 449
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 6.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene184212 SustainPine v3.0 736
• AutoFact: 60S ribosomal protein L6 n=1 Tax=Cyanophora paradoxa RepID=Q9SMI5_CYAPA 0.0
• FL-Next: sp=60S ribosomal protein L6; Cyanophora paradoxa. 0.0
• Sma3: 60S ribosomal protein L6 0.0
Complete
sp_v3.0_unigene184262 SustainPine v3.0 626
• AutoFact: Integrase n=2 Tax=Beta vulgaris RepID=A2I5F8_BETVU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 3.667e-27
Putative C-terminus
sp_v3.0_unigene184316 SustainPine v3.0 494
• AutoFact: zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group] 0.0
• FL-Next: sp=Zinc finger CCCH domain-containing protein 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene184406 SustainPine v3.0 759
• AutoFact: 60S ribosomal protein L16-A [Lodderomyces elongisporus NRRL YB-4239] gb|EDK43281.1| 60S ribosomal protein L16-A [Lodderomyces elongisporus NRRL YB-4239] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L13a 5.409e-21
Complete
sp_v3.0_unigene184472 SustainPine v3.0 341
• AutoFact: DNA repair protein xp-E, putative n=1 Tax=Ricinus communis RepID=B9SKT9_RICCO 5.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene184476 SustainPine v3.0 621
• AutoFact: 60S ribosomal protein L6 n=1 Tax=Mesembryanthemum crystallinum RepID=RL6_MESCR 5.60519e-45
• FL-Next: sp=60S ribosomal protein L6; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L6 0.0
C-terminus
sp_v3.0_unigene184477 SustainPine v3.0 473
• AutoFact: dead-box helicase [Platanus x acerifolia] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.77e-21
Putative C-terminus
sp_v3.0_unigene184508 SustainPine v3.0 507
• AutoFact: PREDICTED: cap binding protein 20-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBB931 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nuclear cap-binding protein 4.622e-11
N-terminus
sp_v3.0_unigene184586 SustainPine v3.0 416
• AutoFact: Zinc finger protein n=3 Tax=Arabidopsis RepID=Q8LEE4_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene184621 SustainPine v3.0 454
• AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 5.0e-40
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.666e-08
C-terminus
sp_v3.0_unigene184630 SustainPine v3.0 361
• AutoFact: zinc finger CCCH domain-containing protein 6 [Arabidopsis thaliana] sp|Q56XU4.1|C3H6_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 6; Short=AtC3H6 dbj|BAD95060.1| hypothetical protein [Arabidopsis thaliana] gb|ABF58975.1| At1g19860 [Arabi 4.0e-09
• FL-Next: sp=Zinc finger CCCH domain-containing protein 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene184646 SustainPine v3.0 473
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CID11 2.932e-16
Internal
sp_v3.0_unigene184878 SustainPine v3.0 345
• AutoFact: putative polypyrimidine track-binding protein [Oryza sativa Japonica Group] 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative polypyrimidine track-binding protein 8.285e-06
C-terminus
sp_v3.0_unigene185087 SustainPine v3.0 795
• AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 6.499e-11
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain