Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene6672 SustainPine v3.0 2958
• AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene6704 SustainPine v3.0 2494
• AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.075e-24
C-terminus
sp_v3.0_unigene6714 SustainPine v3.0 1947
• AutoFact: RHO guanyl-nucleotide exchange factor 7 [Arabidopsis thaliana] emb|CAB82974.1| putative protein [Arabidopsis thaliana] gb|AAU94394.1| At5g02010 [Arabidopsis thaliana] gb|AAV59279.1| At5g02010 [Arabidopsis thaliana] gb|AED90419.1| RHO guanyl-nucleotide exc 0.0
• FL-Next: sp=Rop guanine nucleotide exchange factor 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Pollen-specific kinase partner protein 5.782e-23
C-terminus
sp_v3.0_unigene6761 SustainPine v3.0 2385
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJ03_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6762 SustainPine v3.0 2672
• AutoFact: pre-mRNA-splicing factor 38B [Arabidopsis thaliana] gb|AAM13215.1| unknown protein [Arabidopsis thaliana] gb|AAP68295.1| At5g37370 [Arabidopsis thaliana] gb|AED94173.1| pre-mRNA-splicing factor 38B [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6783 SustainPine v3.0 1187
• AutoFact: small nuclear ribonucleoprotein 31 kDa protein [Arabidopsis thaliana] gb|AAG51392.1|AC011560_24 hypothetical protein; 114721-113936 [Arabidopsis thaliana] gb|AAV31168.1| At3g10400 [Arabidopsis thaliana] gb|AAX49371.1| At3g10400 [Arabidopsis thaliana] gb|A 0.0
• FL-Next: sp=Serine/arginine-rich splicing factor RSZ23; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA binding protein 2.383e-06
Complete
sp_v3.0_unigene6852 SustainPine v3.0 872
• AutoFact: Probable alanyl-tRNA synthetase, chloroplastic n=1 Tax=Populus trichocarpa RepID=SYAP_POPTR 0.0
• FL-Next: sp=Probable alanine--tRNA ligase, chloroplastic; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene6864 SustainPine v3.0 1179
• AutoFact: Zinc finger CCCH domain-containing protein 20 n=2 Tax=Arabidopsis RepID=C3H20_ARATH 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zn-finger transcription factor 4.501e-15
Internal
sp_v3.0_unigene6870 SustainPine v3.0 1068
• AutoFact: Putative DNA-binding protein n=2 Tax=Arabidopsis thaliana RepID=O81047_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein smubp-2, putative 5.596e-09
C-terminus
sp_v3.0_unigene6949 SustainPine v3.0 1775
• AutoFact: putative Helicase SKI2W [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene6955 SustainPine v3.0 1893
• AutoFact: Pin2-interacting protein x1, putative n=1 Tax=Ricinus communis RepID=B9T7Y1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6979 SustainPine v3.0 1694
• AutoFact: Glycosyltransferase, CAZy family GT8 n=3 Tax=Malpighiales RepID=B9H0E2_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycosyltransferase QUASIMODO1, putative 1.19e-27
Putative Complete
sp_v3.0_unigene6993 SustainPine v3.0 2204
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7003 SustainPine v3.0 1844
• AutoFact: Os01g0689900 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q5N7Q8_ORYSJ 0.0
• FL-Next: tr=(Rice Genome Annotation Project) OsWAK10a - OsWAK receptor-like cytoplasmic kinase; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Wall-associated kinase, putative 1.423e-18
Complete
sp_v3.0_unigene7015 SustainPine v3.0 1553
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SNT2_RICCO 2.94273e-44
• FL-Next: sp=Zinc finger CCCH domain-containing protein 56; Oryza sativa subsp. japonica (Rice). 0.0
N-terminus
sp_v3.0_unigene7077 SustainPine v3.0 2278
• AutoFact: calmodulin-binding receptor-like cytoplasmic kinase 3 [Arabidopsis thaliana] gb|AAK32926.1|AF367339_1 At2g11520/F14P14.15 [Arabidopsis thaliana] gb|AAD28055.2| putative protein kinase [Arabidopsis thaliana] gb|AAM16251.1| At2g11520/F14P14.15 [Arabidopsis 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Receptor protein kinase-like 7.399e-14
Putative Complete
sp_v3.0_unigene7089 SustainPine v3.0 2465
• AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein ZFN-like gb|AAD45720.1| zinc finger protein [Pisum sativum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zinc finger CCCH type domain-containing protein ZFN-like 3 3.585e-08
Complete
sp_v3.0_unigene7109 SustainPine v3.0 2504
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 2.469e-18
Complete
sp_v3.0_unigene7121 SustainPine v3.0 1395
• AutoFact: Tonoplast intrinsic protein, putative n=1 Tax=Ricinus communis RepID=B9RS20_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Aquaporin, MIP family, TIP subfamily 3.44579e-42
Complete
sp_v3.0_unigene7198 SustainPine v3.0 2039
• AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 0.0
• FL-Next: sp=Glycine-rich RNA-binding protein 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain