Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene6177 SustainPine v3.0 2835
AutoFact: DNA-binding protein-like [Arabidopsis thaliana] 0.0
FL-Next: sp=E3 ubiquitin-protein ligase COP1; Pisum sativum (Garden pea). 0.0
Sma3: Retinoblastoma-binding protein, putative 1.715e-12
Putative Complete
sp_v3.0_unigene6189 SustainPine v3.0 1636
AutoFact: PREDICTED: similar to TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor isoform 6 [Canis familiaris] 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6225 SustainPine v3.0 2742
AutoFact: PA domain containing protein 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vacuolar-sorting receptor 1 1.039e-07
Putative Complete
sp_v3.0_unigene6240 SustainPine v3.0 1784
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM34_MARPO 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: Leucine-rich repeat receptor-like protein kinase 2.022e-21
Complete
sp_v3.0_unigene6273 SustainPine v3.0 2140
AutoFact: putative RNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6277 SustainPine v3.0 3466
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6297 SustainPine v3.0 2033
AutoFact: DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana] sp|Q9SA27.1|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36 gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 36; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dead-box ATP-dependent RNA helicase 1.097e-10
Complete
sp_v3.0_unigene6337 SustainPine v3.0 2041
AutoFact: Methionine aminopeptidase n=1 Tax=Picea sitchensis RepID=D5AE22_PICSI 0.0
FL-Next: sp=Methionine aminopeptidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Methionine aminopeptidase 1 0.0
Complete
sp_v3.0_unigene6367 SustainPine v3.0 2712
AutoFact: ATP-dependent RNA helicase DHX8/PRP22 [Arabidopsis thaliana] sp|Q38953.2|DHX8_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase dbj|BAB01838.1| pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis th 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.56e-40
N-terminus
sp_v3.0_unigene6387 SustainPine v3.0 2774
AutoFact: PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein-1) (APP-1) isoform 17 [Canis familiaris] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 1.314e-22
Complete
sp_v3.0_unigene6406 SustainPine v3.0 3309
AutoFact: DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] emb|CAL53063.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Complete
sp_v3.0_unigene6471 SustainPine v3.0 1625
AutoFact: UDP-glycosyltransferase 73B4 [Arabidopsis thaliana] sp|Q7Y232.1|U73B4_ARATH RecName: Full=UDP-glycosyltransferase 73B4; AltName: Full=Flavonol 3-O-glucosyltransferase UGT73B4 gb|AAP37678.1| At2g15490 [Arabidopsis thaliana] dbj|BAE99671.1| putative glucosy 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr2 scaffold_97, whole genome shotgun sequence 2.442e-10
Putative Complete
sp_v3.0_unigene6478 SustainPine v3.0 1093
AutoFact: D111/G-patch; Zinc finger, C2H2-type n=1 Tax=Medicago truncatula RepID=Q2HRQ8_MEDTR 7.0e-32
FL-Next: tr=RNA-binding protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
C-terminus
sp_v3.0_unigene6494 SustainPine v3.0 2143
AutoFact: SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb|AAC97224.1| putative helicase [Arabidopsis thaliana] gb|AAL24339.1| SNF2/RAD54 family (ETL1 subfamily) protein [Arabidopsis thaliana] gb|AAO00936.1| SNF2/RAD54 family (ETL1 subfamily) p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 super family 3.151e-12
Putative Complete
sp_v3.0_unigene6499 SustainPine v3.0 2309
AutoFact: SET domain-containing protein (ISS) [Ostreococcus tauri] emb|CAL53729.1| SET domain-containing protein (ISS) [Ostreococcus tauri] 0.0
FL-Next: sp=Probable histone-lysine N-methyltransferase ATXR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SET domain protein 2.756e-06
C-terminus
sp_v3.0_unigene6511 SustainPine v3.0 2620
AutoFact: Phosphofructokinase, putative n=1 Tax=Ricinus communis RepID=B9RRX6_RICCO 0.0
FL-Next: sp=6-phosphofructokinase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Phosphofructokinase, putative 3.151e-19
Complete
sp_v3.0_unigene6548 SustainPine v3.0 1430
AutoFact: BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Photoreceptor-interacting protein-like 9.971e-16
C-terminus
sp_v3.0_unigene6549 SustainPine v3.0 2477
AutoFact: Mating_C domain containing protein 7.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zn-finger transcription factor 4.995e-15
Complete
sp_v3.0_unigene6555 SustainPine v3.0 2950
AutoFact: splicing factor 3B subunit 3 [Arabidopsis thaliana] ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gb|AEE79 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CPSF A subunit, C-terminal 3.006e-09
Complete
sp_v3.0_unigene6590 SustainPine v3.0 3019
AutoFact: putative receptor protein kinase [Arabidopsis thaliana] gb|ACN59306.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb|AEC09344.1| putative receptor protein kinase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Leucine-rich repeat receptor-like protein kinase 8.681e-19
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain