Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3794 SustainPine v3.0 2975
AutoFact: human Mi-2 autoantigen-like protein [Arabidopsis thaliana] dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 5.211e-11
Putative Complete
sp_v3.0_unigene3805 SustainPine v3.0 2394
AutoFact: PREDICTED: similar to RECQSIM (Arabidopsis RecQ helicase sim); ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019849D7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative DNA helicase RecQsim 7.738e-09
C-terminus
sp_v3.0_unigene3838 SustainPine v3.0 1846
AutoFact: Unassigned protein
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Complete
sp_v3.0_unigene3841 SustainPine v3.0 1836
AutoFact: Transcription initiation factor TFIID, subunit TAF1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKZ9_PHYPA 0.0
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.823e-09
Internal
sp_v3.0_unigene3866 SustainPine v3.0 2230
AutoFact: Heterogeneous nuclear ribonucleoprotein A3-like protein 2 n=3 Tax=Andropogoneae RepID=B6TV58_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene3890 SustainPine v3.0 2993
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene3908 SustainPine v3.0 3047
AutoFact: Leucine zipper-ef-hand containing transmembrane protein, putative n=1 Tax=Ricinus communis RepID=B9RM04_RICCO 0.0
FL-Next: sp=Caltractin; Atriplex nummularia (Old man saltbush) (Atriplex johnstonii). 0.0
Sma3: Leucine zipper-ef-hand containing transmembrane protein, putative 5.237e-09
Complete
sp_v3.0_unigene3910 SustainPine v3.0 1812
AutoFact: putative beta-1,3-galactosyltransferase 9 [Arabidopsis thaliana] sp|Q5XEZ1.1|B3GT9_ARATH RecName: Full=Probable beta-1,3-galactosyltransferase 9 gb|AAU94388.1| At2g25300 [Arabidopsis thaliana] gb|AAW50705.1| At2g25300 [Arabidopsis thaliana] gb|AEC07684.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-1,3-galactosyltransferase sqv-2, putative 9.598e-23
Putative Complete
sp_v3.0_unigene3979 SustainPine v3.0 2366
AutoFact: RHO guanyl-nucleotide exchange factor 7 [Arabidopsis thaliana] emb|CAB82974.1| putative protein [Arabidopsis thaliana] gb|AAU94394.1| At5g02010 [Arabidopsis thaliana] gb|AAV59279.1| At5g02010 [Arabidopsis thaliana] gb|AED90419.1| RHO guanyl-nucleotide exc 0.0
FL-Next: sp=Rop guanine nucleotide exchange factor 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Rop guanine nucleotide exchange factor, putative 1.006e-22
C-terminus
sp_v3.0_unigene3987 SustainPine v3.0 552
AutoFact: Cir, putative n=1 Tax=Ricinus communis RepID=B9S1S8_RICCO 4.0e-28
FL-Next: sp=Uncharacterized zinc finger CCHC domain-containing protein At4g19190; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene3989 SustainPine v3.0 1333
AutoFact: 3'-5' exonuclease, putative n=1 Tax=Ricinus communis RepID=B9SDW9_RICCO 0.0
FL-Next: tr=3'-5' exonuclease, putative; Ricinus communis (Castor bean). 0.0
Sma3: RRP6-like protein 3 9.747e-06
C-terminus
sp_v3.0_unigene4001 SustainPine v3.0 3488
AutoFact: Gb|AAF56406.1 n=4 Tax=Arabidopsis RepID=Q9LTX7_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Chromosome undetermined scaffold_1104, whole genome shotgun sequence 4.061e-09
N-terminus
sp_v3.0_unigene4067 SustainPine v3.0 3499
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 8 dbj|BAD25226.1| putative RNA helicase [Oryza sativa Japonica Group] dbj|BAG92832.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57460.1| hypothetical protein OsJ_07688 [Oryza sativa Japon 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: eIF-4A-1 4.16e-08
Complete
sp_v3.0_unigene4147 SustainPine v3.0 835
AutoFact: HIV Tat-specific factor 1 [Arabidopsis thaliana] emb|CAC01867.1| putative protein [Arabidopsis thaliana] gb|AAY25436.1| At5g16260 [Arabidopsis thaliana] dbj|BAF01062.1| hypothetical protein [Arabidopsis thaliana] gb|AED92266.1| HIV Tat-specific factor 1 [ 6.99949e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene4229 SustainPine v3.0 2453
AutoFact: DUF1777 multi-domain protein 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snRNP auxiliary factor large subunit B 1.38e-15
Complete
sp_v3.0_unigene4230 SustainPine v3.0 1244
AutoFact: GEM-like protein 5 [Arabidopsis thaliana] sp|Q9LYV6.1|GEML5_ARATH RecName: Full=GEM-like protein 5 emb|CAB86627.1| ABA-responsive protein-like [Arabidopsis thaliana] gb|AAR20771.1| At5g13200 [Arabidopsis thaliana] gb|AAS92344.1| At5g13200 [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_139, whole genome shotgun sequence 5.18e-31
Complete
sp_v3.0_unigene4235 SustainPine v3.0 637
AutoFact: Chaperone protein DNAj, putative n=1 Tax=Ricinus communis RepID=B9RJS6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DnaJ protein-like 2.807e-07
C-terminus
sp_v3.0_unigene4237 SustainPine v3.0 1324
AutoFact: RecName: Full=Protein terminal ear1 homolog; AltName: Full=Protein LEAFY HEAD2; AltName: Full=Protein PLASTOCHRON2 gb|ABD49441.1| leafy head 2 [Oryza sativa] gb|EAY76892.1| hypothetical protein OsI_04851 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene4278 SustainPine v3.0 616
AutoFact: Helicase, C-terminal [Medicago truncatula] 7.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 30 6.509e-08
Putative C-terminus
sp_v3.0_unigene4293 SustainPine v3.0 598
AutoFact: HNH endonuclease [Arabidopsis thaliana] gb|AAR24724.1| At2g23840 [Arabidopsis thaliana] gb|AAS47666.1| At2g23840 [Arabidopsis thaliana] gb|AEC07498.1| HNH endonuclease [Arabidopsis thaliana] 2.0e-07
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain