Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: zinc ion binding

Term: GO:0008270  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene2886 SustainPine v3.0 2091
• AutoFact: zinc finger CCCH domain-containing protein 40 [Arabidopsis thaliana] sp|Q93XW7.1|C3H40_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 40; Short=AtC3H40 gb|AAL24381.1| Unknown protein [Arabidopsis thaliana] gb|AAM91191.1| unknown protein [A 7.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2900 SustainPine v3.0 1425
• AutoFact: zinc finger protein-like protein [Arabidopsis thaliana] gb|AAF76471.1|AC020622_5 Contains similarity to an unnamed protein from Homo sapiens gb|AK001277 and contains an Ank repeat PF|00023 domain [Arabidopsis thaliana] dbj|BAC43309.1| unknown protein [Ara 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene2916 SustainPine v3.0 379
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 3.0e-32
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Reverse transcriptase 7.098e-36
Internal
sp_v3.0_unigene2932 SustainPine v3.0 833
• AutoFact: DWNN domain-containing protein [Arabidopsis thaliana] gb|AEE83884.1| DWNN domain-containing protein [Arabidopsis thaliana] 2.0e-18
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
N-terminus
sp_v3.0_unigene2949 SustainPine v3.0 2074
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974937.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAK92731.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM20100.1| putative RNA-binding protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 3.03e-11
Complete
sp_v3.0_unigene2956 SustainPine v3.0 1564
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8SDS6_SELML 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.541e-08
Internal
sp_v3.0_unigene2981 SustainPine v3.0 738
• AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene2990 SustainPine v3.0 2315
• AutoFact: rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb|AEE28513.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Lyase, putative 3.464e-27
Complete
sp_v3.0_unigene3007 SustainPine v3.0 5125
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
• FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
• Sma3: Gag-Pol polyprotein 6.984e-08
Complete
sp_v3.0_unigene3050 SustainPine v3.0 2951
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Vitis vinifera RepID=A5AXN2_VITVI 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene3062 SustainPine v3.0 3706
• AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HYM3_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA repair helicase rad5,16, putative 9.176e-11
Putative Complete
sp_v3.0_unigene3084 SustainPine v3.0 928
• AutoFact: cysteine-rich receptor-like protein kinase 6 [Arabidopsis thaliana] dbj|BAC43097.1| putative receptor-like protein kinase 5 RLK5 [Arabidopsis thaliana] gb|AEE84715.1| cysteine-rich receptor-like protein kinase 6 [Arabidopsis thaliana] 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_278, whole genome shotgun sequence 9.321e-20
C-terminus
sp_v3.0_unigene3085 SustainPine v3.0 2515
• AutoFact: DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana] gb|AED95509.1| DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana] 3.0e-13
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene3091 SustainPine v3.0 2684
• AutoFact: zf-TRAF domain containing protein 3.0e-10
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Putative Complete
sp_v3.0_unigene3117 SustainPine v3.0 2231
• AutoFact: Leukotriene A-4 hydrolase, putative n=1 Tax=Ricinus communis RepID=B9SD61_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Leukotriene A-4 hydrolase, putative 4.39e-09
Complete
sp_v3.0_unigene3121 SustainPine v3.0 3756
• AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TR00_VITVI 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 25; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene3136 SustainPine v3.0 3007
• AutoFact: Med15 domain containing protein 4.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative transparent testa 1 2.751e-08
Complete
sp_v3.0_unigene3138 SustainPine v3.0 1188
• AutoFact: DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene3141 SustainPine v3.0 1123
• AutoFact: methyl-CPG-binding domain 9 [Arabidopsis thaliana] sp|Q9SGH2.1|MBD9_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 9; Short=AtMBD9; Short=MBD09; AltName: Full=Histone acetyl tranferase MBD9; AltName: Full=Methyl-CpG-binding protein MBD9 5.60519e-45
• FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene3147 SustainPine v3.0 649
• AutoFact: Zinc finger CCCH domain-containing protein 16 n=1 Tax=Arabidopsis thaliana RepID=F4HZ22_ARATH 1.0e-33
• FL-Next: sp=Zinc finger CCCH domain-containing protein 16; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: AtC3H16 8.772e-06
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain