Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome assembly

Term: GO:0006334  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene143138 SustainPine v3.0 1186
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 3.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Putative Complete
sp_v3.0_unigene143166 SustainPine v3.0 402
AutoFact: Histone H2B (Fragment) n=1 Tax=Asparagus officinalis RepID=Q43724_ASPOF 3.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.393e-34
C-terminus
sp_v3.0_unigene143204 SustainPine v3.0 207
coding
sp_v3.0_unigene143219 SustainPine v3.0 776
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene143319 SustainPine v3.0 762
AutoFact: Variant of histone H1 n=1 Tax=Lilium longiflorum RepID=Q9ST40_LILLO 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Putative N-terminus
sp_v3.0_unigene143334 SustainPine v3.0 517
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 8.00001e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
C-terminus
sp_v3.0_unigene143382 SustainPine v3.0 262
AutoFact: PREDICTED: similar to H2A histone family, member Z isoform 1 n=1 Tax=Canis lupus familiaris RepID=UPI00005A03C9 1.0e-12
FL-Next: sp=Histone H2A; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene143428 SustainPine v3.0 306
AutoFact: Histone H2A n=1 Tax=Picea sitchensis RepID=A9P2K6_PICSI 1.0e-14
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene143648 SustainPine v3.0 252
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 7.05e-17
Internal
sp_v3.0_unigene144126 SustainPine v3.0 329
AutoFact: Histone H3 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LR62_9ALVE 6.0e-06
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 1.152e-29
Putative C-terminus
sp_v3.0_unigene144194 SustainPine v3.0 390
AutoFact: Histone H2B n=2 Tax=Volvox carteri f. nagariensis RepID=D8TP19_VOLCA 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 4.239e-34
C-terminus
sp_v3.0_unigene144308 SustainPine v3.0 235
AutoFact: nucleosome assembly protein 1-like protein 4 [Nicotiana tabacum] 4.0e-15
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene144546 SustainPine v3.0 383
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 3.99931e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 6.231e-36
Putative Complete
sp_v3.0_unigene144570 SustainPine v3.0 513
AutoFact: Histone H2B.5 n=3 Tax=Magnoliophyta RepID=H2B5_WHEAT 5.60519e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 2.725e-36
Putative Complete
sp_v3.0_unigene144764 SustainPine v3.0 1073
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene144806 SustainPine v3.0 720
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 0.0
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene144818 SustainPine v3.0 608
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 3.0e-22
FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H1 0.0
Internal
sp_v3.0_unigene144846 SustainPine v3.0 396
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 2.188e-31
Putative Complete
sp_v3.0_unigene144879 SustainPine v3.0 332
AutoFact: histone cluster 1, H4-like [Danio rerio] gb|AAI22276.1| Zgc:153409 [Danio rerio] 3.0e-34
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 1.127e-11
Putative Complete
sp_v3.0_unigene144931 SustainPine v3.0 486
AutoFact: Histone H3 (Fragment) n=10 Tax=Glycine RepID=Q9FVB2_GLYTA 1.0e-09
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 1.408e-07
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain